Hb_005568_010

Information

Type -
Description -
Location Contig5568: 935-5199
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005568_010 0.0 - - -
2 Hb_052941_010 0.008503733 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
3 Hb_001902_120 0.1033965284 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
4 Hb_002045_200 0.1178834496 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
5 Hb_000042_240 0.1331007955 - - -
6 Hb_001425_050 0.1389779659 - - -
7 Hb_002326_170 0.1918281624 - - Protein Z, putative [Ricinus communis]
8 Hb_010174_070 0.2010575374 - - -
9 Hb_001741_040 0.2060358961 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
10 Hb_004461_020 0.2075083221 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
11 Hb_003913_140 0.212539819 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
12 Hb_179520_010 0.2248522392 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
13 Hb_108528_010 0.2374229008 - - unnamed protein product [Coffea canephora]
14 Hb_000617_290 0.2448511438 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000130_030 0.2476518446 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
16 Hb_002450_070 0.2486987324 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
17 Hb_000363_150 0.248813629 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
18 Hb_000322_190 0.2523531556 - - -
19 Hb_001425_060 0.2535546983 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000227_200 0.2554728685 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]

Gene co-expression network

sample Hb_005568_010 Hb_005568_010 Hb_052941_010 Hb_052941_010 Hb_005568_010--Hb_052941_010 Hb_001902_120 Hb_001902_120 Hb_005568_010--Hb_001902_120 Hb_002045_200 Hb_002045_200 Hb_005568_010--Hb_002045_200 Hb_000042_240 Hb_000042_240 Hb_005568_010--Hb_000042_240 Hb_001425_050 Hb_001425_050 Hb_005568_010--Hb_001425_050 Hb_002326_170 Hb_002326_170 Hb_005568_010--Hb_002326_170 Hb_052941_010--Hb_001902_120 Hb_052941_010--Hb_002045_200 Hb_052941_010--Hb_001425_050 Hb_052941_010--Hb_000042_240 Hb_052941_010--Hb_002326_170 Hb_001902_120--Hb_002045_200 Hb_001902_120--Hb_001425_050 Hb_179520_010 Hb_179520_010 Hb_001902_120--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_001902_120--Hb_010174_070 Hb_002045_200--Hb_002326_170 Hb_002045_200--Hb_001425_050 Hb_003913_140 Hb_003913_140 Hb_002045_200--Hb_003913_140 Hb_042223_010 Hb_042223_010 Hb_000042_240--Hb_042223_010 Hb_000042_240--Hb_001902_120 Hb_000042_240--Hb_010174_070 Hb_001741_040 Hb_001741_040 Hb_000042_240--Hb_001741_040 Hb_001425_060 Hb_001425_060 Hb_001425_050--Hb_001425_060 Hb_001425_050--Hb_002326_170 Hb_001276_060 Hb_001276_060 Hb_002326_170--Hb_001276_060 Hb_008864_060 Hb_008864_060 Hb_002326_170--Hb_008864_060 Hb_001425_070 Hb_001425_070 Hb_002326_170--Hb_001425_070 Hb_002326_170--Hb_001902_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140679 0.110513 0.186103 0 0

CAGE analysis