Hb_005568_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig5568: 13983-18258
Sequence    

Annotation

kegg
ID rcu:RCOM_0328910
description Protein AINTEGUMENTA, putative (EC:1.3.1.74)
nr
ID XP_012064916.1
description PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
swissprot
ID Q9SK03
description Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2
trembl
ID A0A067L6P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05603 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor rap2-7-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48555: 15559-16767 , PASA_asmbl_48556: 15559-18035 , PASA_asmbl_48558: 14915-18035 , PASA_asmbl_48559: 13587-18035 , PASA_asmbl_48560: 16925-17076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005568_020 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
2 Hb_000735_060 0.0769424752 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
3 Hb_002078_390 0.08363381 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
4 Hb_003606_050 0.0857378272 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
5 Hb_000008_200 0.0882230624 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
6 Hb_128196_010 0.0934953485 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000207_350 0.0965806679 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
8 Hb_022092_110 0.0981511648 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
9 Hb_001104_150 0.0997748848 - - PREDICTED: protein ROS1 [Jatropha curcas]
10 Hb_116647_010 0.1024596654 - - conserved hypothetical protein [Ricinus communis]
11 Hb_028008_040 0.105848467 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000418_170 0.1065887278 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
13 Hb_001221_060 0.1074946586 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
14 Hb_070498_010 0.1082059858 - - receptor kinase, putative [Ricinus communis]
15 Hb_000465_020 0.1095709785 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
16 Hb_001936_180 0.1102287764 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
17 Hb_002311_280 0.1131115528 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
18 Hb_008511_040 0.1195464744 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_001054_040 0.1200885004 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
20 Hb_004218_200 0.12209477 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005568_020 Hb_005568_020 Hb_000735_060 Hb_000735_060 Hb_005568_020--Hb_000735_060 Hb_002078_390 Hb_002078_390 Hb_005568_020--Hb_002078_390 Hb_003606_050 Hb_003606_050 Hb_005568_020--Hb_003606_050 Hb_000008_200 Hb_000008_200 Hb_005568_020--Hb_000008_200 Hb_128196_010 Hb_128196_010 Hb_005568_020--Hb_128196_010 Hb_000207_350 Hb_000207_350 Hb_005568_020--Hb_000207_350 Hb_000735_060--Hb_003606_050 Hb_022092_110 Hb_022092_110 Hb_000735_060--Hb_022092_110 Hb_001936_180 Hb_001936_180 Hb_000735_060--Hb_001936_180 Hb_000418_170 Hb_000418_170 Hb_000735_060--Hb_000418_170 Hb_000735_060--Hb_000008_200 Hb_000465_020 Hb_000465_020 Hb_002078_390--Hb_000465_020 Hb_028008_040 Hb_028008_040 Hb_002078_390--Hb_028008_040 Hb_000243_060 Hb_000243_060 Hb_002078_390--Hb_000243_060 Hb_000417_050 Hb_000417_050 Hb_002078_390--Hb_000417_050 Hb_002311_280 Hb_002311_280 Hb_002078_390--Hb_002311_280 Hb_003606_050--Hb_000008_200 Hb_001085_190 Hb_001085_190 Hb_003606_050--Hb_001085_190 Hb_001188_050 Hb_001188_050 Hb_003606_050--Hb_001188_050 Hb_003606_050--Hb_001936_180 Hb_008511_040 Hb_008511_040 Hb_000008_200--Hb_008511_040 Hb_091318_010 Hb_091318_010 Hb_000008_200--Hb_091318_010 Hb_001268_160 Hb_001268_160 Hb_000008_200--Hb_001268_160 Hb_070498_010 Hb_070498_010 Hb_128196_010--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_128196_010--Hb_002301_400 Hb_001157_050 Hb_001157_050 Hb_128196_010--Hb_001157_050 Hb_012404_020 Hb_012404_020 Hb_128196_010--Hb_012404_020 Hb_001221_060 Hb_001221_060 Hb_128196_010--Hb_001221_060 Hb_004855_020 Hb_004855_020 Hb_000207_350--Hb_004855_020 Hb_001104_150 Hb_001104_150 Hb_000207_350--Hb_001104_150 Hb_001123_310 Hb_001123_310 Hb_000207_350--Hb_001123_310 Hb_010868_040 Hb_010868_040 Hb_000207_350--Hb_010868_040 Hb_010381_040 Hb_010381_040 Hb_000207_350--Hb_010381_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.174125 1.67274 7.46927 7.97885 0.109493 0.14364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.360309 0.170097 0.107351 1.4219 4.107

CAGE analysis