Hb_005568_070

Information

Type -
Description -
Location Contig5568: 84217-85701
Sequence    

Annotation

kegg
ID cmo:103497217
description protein NRT1/ PTR FAMILY 2.7-like
nr
ID XP_012441802.1
description PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
swissprot
ID Q9M171
description Protein NRT1/ PTR FAMILY 2.1 OS=Arabidopsis thaliana GN=NPF2.1 PE=2 SV=1
trembl
ID A0A0D2TMZ3
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G104700 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005568_070 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
2 Hb_031862_170 0.1169370719 - - immunophilin, putative [Ricinus communis]
3 Hb_000018_160 0.1174334929 - - nitrate transporter, putative [Ricinus communis]
4 Hb_000211_080 0.1212442485 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
5 Hb_000329_540 0.1266143435 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
6 Hb_004102_130 0.1280603312 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003540_140 0.1370912968 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
8 Hb_000580_060 0.1403698483 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
9 Hb_003673_020 0.1432732253 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
10 Hb_004307_040 0.1455637418 - - -
11 Hb_000175_530 0.1461295657 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
12 Hb_000156_030 0.1475416537 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010290_020 0.1491260037 - - RAB6-interacting protein, putative [Ricinus communis]
14 Hb_172256_010 0.1506737764 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000161_100 0.1508789639 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
16 Hb_002026_230 0.1536525409 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
17 Hb_012150_070 0.1547554472 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
18 Hb_035360_010 0.159096336 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
19 Hb_007634_020 0.1621752822 - - -
20 Hb_000441_230 0.1630526451 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_005568_070 Hb_005568_070 Hb_031862_170 Hb_031862_170 Hb_005568_070--Hb_031862_170 Hb_000018_160 Hb_000018_160 Hb_005568_070--Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_005568_070--Hb_000211_080 Hb_000329_540 Hb_000329_540 Hb_005568_070--Hb_000329_540 Hb_004102_130 Hb_004102_130 Hb_005568_070--Hb_004102_130 Hb_003540_140 Hb_003540_140 Hb_005568_070--Hb_003540_140 Hb_031862_170--Hb_004102_130 Hb_000156_030 Hb_000156_030 Hb_031862_170--Hb_000156_030 Hb_000590_080 Hb_000590_080 Hb_031862_170--Hb_000590_080 Hb_003673_020 Hb_003673_020 Hb_031862_170--Hb_003673_020 Hb_004032_460 Hb_004032_460 Hb_031862_170--Hb_004032_460 Hb_000018_160--Hb_000211_080 Hb_035360_010 Hb_035360_010 Hb_000018_160--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000018_160--Hb_000619_070 Hb_000544_120 Hb_000544_120 Hb_000018_160--Hb_000544_120 Hb_000161_100 Hb_000161_100 Hb_000018_160--Hb_000161_100 Hb_172256_010 Hb_172256_010 Hb_000211_080--Hb_172256_010 Hb_000211_080--Hb_003673_020 Hb_000779_040 Hb_000779_040 Hb_000211_080--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_000211_080--Hb_000792_110 Hb_000211_080--Hb_035360_010 Hb_000211_090 Hb_000211_090 Hb_000211_080--Hb_000211_090 Hb_000441_230 Hb_000441_230 Hb_000329_540--Hb_000441_230 Hb_000329_540--Hb_003540_140 Hb_000329_540--Hb_000156_030 Hb_000175_530 Hb_000175_530 Hb_000329_540--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_000329_540--Hb_000580_060 Hb_004102_130--Hb_172256_010 Hb_000016_180 Hb_000016_180 Hb_004102_130--Hb_000016_180 Hb_004102_130--Hb_003673_020 Hb_004102_130--Hb_000211_080 Hb_004531_090 Hb_004531_090 Hb_004102_130--Hb_004531_090 Hb_000176_170 Hb_000176_170 Hb_004102_130--Hb_000176_170 Hb_002769_040 Hb_002769_040 Hb_003540_140--Hb_002769_040 Hb_003540_140--Hb_000441_230 Hb_003540_140--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_003540_140--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_003540_140--Hb_003226_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.63286 0.431263 0.110601 0.123515 3.58749 3.28512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.221159 0.217411 0.477908 0.105104 0.0884896

CAGE analysis