Hb_005568_090

Information

Type -
Description -
Location Contig5568: 89874-117987
Sequence    

Annotation

kegg
ID rcu:RCOM_0624690
description WD-repeat protein, putative
nr
ID XP_002532257.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q8RWZ7
description V-type proton ATPase subunit a1 OS=Arabidopsis thaliana GN=VHA-a1 PE=2 SV=1
trembl
ID B9T1Y8
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0624690 PE=4 SV=1
Gene Ontology
ID GO:0033179
description ddb1- and cul4-associated factor 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48572: 93083-93329 , PASA_asmbl_48574: 105220-105638 , PASA_asmbl_48575: 113165-113473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005568_090 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_000165_110 0.1442638183 - - unknown [Medicago truncatula]
3 Hb_000058_050 0.1449275788 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
4 Hb_000890_010 0.1536994769 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011609_010 0.1547840752 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
6 Hb_000189_390 0.1578415913 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
7 Hb_002609_190 0.1611127474 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
8 Hb_001624_040 0.1634749692 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
9 Hb_000836_540 0.1647628995 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
10 Hb_013405_150 0.1649984759 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
11 Hb_003089_030 0.1684753298 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
12 Hb_007777_010 0.1692998374 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
13 Hb_000343_150 0.1699804166 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
14 Hb_161549_010 0.1714618727 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012305_140 0.1723007631 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
16 Hb_005941_020 0.1732964385 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
17 Hb_002291_060 0.1743724805 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
18 Hb_004267_060 0.1750712222 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_044155_010 0.1760583029 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
20 Hb_003849_040 0.1770946484 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]

Gene co-expression network

sample Hb_005568_090 Hb_005568_090 Hb_000165_110 Hb_000165_110 Hb_005568_090--Hb_000165_110 Hb_000058_050 Hb_000058_050 Hb_005568_090--Hb_000058_050 Hb_000890_010 Hb_000890_010 Hb_005568_090--Hb_000890_010 Hb_011609_010 Hb_011609_010 Hb_005568_090--Hb_011609_010 Hb_000189_390 Hb_000189_390 Hb_005568_090--Hb_000189_390 Hb_002609_190 Hb_002609_190 Hb_005568_090--Hb_002609_190 Hb_000165_120 Hb_000165_120 Hb_000165_110--Hb_000165_120 Hb_001114_020 Hb_001114_020 Hb_000165_110--Hb_001114_020 Hb_004525_070 Hb_004525_070 Hb_000165_110--Hb_004525_070 Hb_000165_110--Hb_000058_050 Hb_002291_060 Hb_002291_060 Hb_000165_110--Hb_002291_060 Hb_000058_050--Hb_002609_190 Hb_010368_080 Hb_010368_080 Hb_000058_050--Hb_010368_080 Hb_012305_140 Hb_012305_140 Hb_000058_050--Hb_012305_140 Hb_000076_100 Hb_000076_100 Hb_000058_050--Hb_000076_100 Hb_001196_080 Hb_001196_080 Hb_000058_050--Hb_001196_080 Hb_006132_040 Hb_006132_040 Hb_000890_010--Hb_006132_040 Hb_013405_150 Hb_013405_150 Hb_000890_010--Hb_013405_150 Hb_005610_080 Hb_005610_080 Hb_000890_010--Hb_005610_080 Hb_000077_120 Hb_000077_120 Hb_000890_010--Hb_000077_120 Hb_004236_030 Hb_004236_030 Hb_000890_010--Hb_004236_030 Hb_044155_010 Hb_044155_010 Hb_000890_010--Hb_044155_010 Hb_000803_090 Hb_000803_090 Hb_011609_010--Hb_000803_090 Hb_001624_040 Hb_001624_040 Hb_011609_010--Hb_001624_040 Hb_000008_390 Hb_000008_390 Hb_011609_010--Hb_000008_390 Hb_001621_110 Hb_001621_110 Hb_011609_010--Hb_001621_110 Hb_000062_360 Hb_000062_360 Hb_011609_010--Hb_000062_360 Hb_003529_180 Hb_003529_180 Hb_011609_010--Hb_003529_180 Hb_076233_030 Hb_076233_030 Hb_000189_390--Hb_076233_030 Hb_014497_030 Hb_014497_030 Hb_000189_390--Hb_014497_030 Hb_000189_390--Hb_000803_090 Hb_000189_390--Hb_011609_010 Hb_000189_390--Hb_003529_180 Hb_124951_010 Hb_124951_010 Hb_000189_390--Hb_124951_010 Hb_001133_090 Hb_001133_090 Hb_002609_190--Hb_001133_090 Hb_002609_190--Hb_012305_140 Hb_004800_130 Hb_004800_130 Hb_002609_190--Hb_004800_130 Hb_007031_040 Hb_007031_040 Hb_002609_190--Hb_007031_040 Hb_002259_110 Hb_002259_110 Hb_002609_190--Hb_002259_110 Hb_001205_180 Hb_001205_180 Hb_002609_190--Hb_001205_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18063 1.90582 3.10894 0.553073 1.23991 0.334883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109593 0.0862397 0.282453 0.718618 0.91875

CAGE analysis