Hb_005568_100

Information

Type -
Description -
Location Contig5568: 119035-119761
Sequence    

Annotation

kegg
ID csv:101226714
description vacuolar proton ATPase a3-like
nr
ID KEH39309.1
description vacuolar proton ATPase a3-like protein [Medicago truncatula]
swissprot
ID -
description -
trembl
ID A0A072VBB7
description V-type proton ATPase subunit a OS=Medicago truncatula GN=MTR_2g093210 PE=3 SV=1
Gene Ontology
ID GO:0033179
description vacuolar proton atpase a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005568_100 0.0 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
2 Hb_014919_020 0.2029803485 - - -
3 Hb_010521_020 0.218695347 - - -
4 Hb_000789_130 0.239297663 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
5 Hb_002232_300 0.2552196956 - - Squalene monooxygenase, putative [Ricinus communis]
6 Hb_005548_030 0.2563385729 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
7 Hb_001944_030 0.256693312 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
8 Hb_000010_270 0.2608403796 - - PREDICTED: vignain [Jatropha curcas]
9 Hb_001114_020 0.2647664939 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
10 Hb_005568_090 0.2656182352 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_186857_010 0.2673301898 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_000984_250 0.2683146868 - - PREDICTED: uncharacterized protein LOC105630783 [Jatropha curcas]
13 Hb_000816_010 0.2688539221 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
14 Hb_114638_010 0.2732448154 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
15 Hb_000189_430 0.2735262692 - - unnamed protein product [Vitis vinifera]
16 Hb_032990_020 0.2771728307 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000820_160 0.27973123 - - -
18 Hb_059301_010 0.281439488 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
19 Hb_001767_040 0.2835236001 - - dehydroascorbate reductase, putative [Ricinus communis]
20 Hb_078160_010 0.2836365109 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]

Gene co-expression network

sample Hb_005568_100 Hb_005568_100 Hb_014919_020 Hb_014919_020 Hb_005568_100--Hb_014919_020 Hb_010521_020 Hb_010521_020 Hb_005568_100--Hb_010521_020 Hb_000789_130 Hb_000789_130 Hb_005568_100--Hb_000789_130 Hb_002232_300 Hb_002232_300 Hb_005568_100--Hb_002232_300 Hb_005548_030 Hb_005548_030 Hb_005568_100--Hb_005548_030 Hb_001944_030 Hb_001944_030 Hb_005568_100--Hb_001944_030 Hb_161023_010 Hb_161023_010 Hb_014919_020--Hb_161023_010 Hb_000816_010 Hb_000816_010 Hb_014919_020--Hb_000816_010 Hb_000413_150 Hb_000413_150 Hb_014919_020--Hb_000413_150 Hb_188411_010 Hb_188411_010 Hb_014919_020--Hb_188411_010 Hb_059301_010 Hb_059301_010 Hb_014919_020--Hb_059301_010 Hb_010521_030 Hb_010521_030 Hb_010521_020--Hb_010521_030 Hb_001195_190 Hb_001195_190 Hb_010521_020--Hb_001195_190 Hb_010521_020--Hb_000789_130 Hb_000010_270 Hb_000010_270 Hb_010521_020--Hb_000010_270 Hb_004296_010 Hb_004296_010 Hb_010521_020--Hb_004296_010 Hb_000789_130--Hb_000816_010 Hb_000984_250 Hb_000984_250 Hb_000789_130--Hb_000984_250 Hb_000505_110 Hb_000505_110 Hb_000789_130--Hb_000505_110 Hb_000453_140 Hb_000453_140 Hb_000789_130--Hb_000453_140 Hb_001767_040 Hb_001767_040 Hb_002232_300--Hb_001767_040 Hb_000684_130 Hb_000684_130 Hb_002232_300--Hb_000684_130 Hb_002475_120 Hb_002475_120 Hb_002232_300--Hb_002475_120 Hb_002232_300--Hb_010521_020 Hb_054436_010 Hb_054436_010 Hb_002232_300--Hb_054436_010 Hb_000692_120 Hb_000692_120 Hb_005548_030--Hb_000692_120 Hb_003119_050 Hb_003119_050 Hb_005548_030--Hb_003119_050 Hb_001196_080 Hb_001196_080 Hb_005548_030--Hb_001196_080 Hb_005000_140 Hb_005000_140 Hb_005548_030--Hb_005000_140 Hb_074184_010 Hb_074184_010 Hb_005548_030--Hb_074184_010 Hb_055488_020 Hb_055488_020 Hb_005548_030--Hb_055488_020 Hb_001214_170 Hb_001214_170 Hb_001944_030--Hb_001214_170 Hb_004330_030 Hb_004330_030 Hb_001944_030--Hb_004330_030 Hb_000260_370 Hb_000260_370 Hb_001944_030--Hb_000260_370 Hb_007645_120 Hb_007645_120 Hb_001944_030--Hb_007645_120 Hb_005535_060 Hb_005535_060 Hb_001944_030--Hb_005535_060 Hb_000189_430 Hb_000189_430 Hb_001944_030--Hb_000189_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.94601 1.31695 2.24454 1.56105 2.40389 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.26776 0.732668 0.587405

CAGE analysis