Hb_005568_130

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig5568: 142742-144672
Sequence    

Annotation

kegg
ID rcu:RCOM_0624640
description zinc finger protein, putative
nr
ID XP_002532252.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8LE43
description Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2
trembl
ID B9T1Y3
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0624640 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48581: 142829-144550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005568_130 0.0 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
2 Hb_003216_050 0.1081388789 - - PREDICTED: OBERON-like protein [Jatropha curcas]
3 Hb_001662_170 0.1128609997 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
4 Hb_000163_230 0.124832474 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
5 Hb_002774_150 0.126463766 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
6 Hb_004032_310 0.1269748195 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
7 Hb_003752_120 0.1280056821 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
8 Hb_000056_300 0.1314344608 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
9 Hb_012258_020 0.1317830415 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_004324_060 0.1323549093 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
11 Hb_005649_090 0.1368282841 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
12 Hb_011360_090 0.1392026829 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
13 Hb_012038_010 0.1401562752 - - phospholipid-transporting atpase, putative [Ricinus communis]
14 Hb_000117_060 0.1402337909 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
15 Hb_172421_010 0.1403741295 - - cysteine protease [Hevea brasiliensis]
16 Hb_001196_080 0.1425698354 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
17 Hb_003078_030 0.1434469502 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
18 Hb_003637_020 0.1439513978 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000671_060 0.1454047132 - - protein binding protein, putative [Ricinus communis]
20 Hb_012725_040 0.1455133176 - - receptor serine-threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005568_130 Hb_005568_130 Hb_003216_050 Hb_003216_050 Hb_005568_130--Hb_003216_050 Hb_001662_170 Hb_001662_170 Hb_005568_130--Hb_001662_170 Hb_000163_230 Hb_000163_230 Hb_005568_130--Hb_000163_230 Hb_002774_150 Hb_002774_150 Hb_005568_130--Hb_002774_150 Hb_004032_310 Hb_004032_310 Hb_005568_130--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_005568_130--Hb_003752_120 Hb_003216_050--Hb_001662_170 Hb_001053_200 Hb_001053_200 Hb_003216_050--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_003216_050--Hb_008103_100 Hb_001409_050 Hb_001409_050 Hb_003216_050--Hb_001409_050 Hb_000649_300 Hb_000649_300 Hb_003216_050--Hb_000649_300 Hb_004106_010 Hb_004106_010 Hb_001662_170--Hb_004106_010 Hb_012787_040 Hb_012787_040 Hb_001662_170--Hb_012787_040 Hb_001662_170--Hb_004032_310 Hb_001662_170--Hb_001053_200 Hb_001662_170--Hb_003752_120 Hb_011360_090 Hb_011360_090 Hb_001662_170--Hb_011360_090 Hb_000454_140 Hb_000454_140 Hb_000163_230--Hb_000454_140 Hb_001009_090 Hb_001009_090 Hb_000163_230--Hb_001009_090 Hb_000045_260 Hb_000045_260 Hb_000163_230--Hb_000045_260 Hb_003078_030 Hb_003078_030 Hb_000163_230--Hb_003078_030 Hb_000671_060 Hb_000671_060 Hb_000163_230--Hb_000671_060 Hb_000186_200 Hb_000186_200 Hb_000163_230--Hb_000186_200 Hb_004324_060 Hb_004324_060 Hb_002774_150--Hb_004324_060 Hb_002485_040 Hb_002485_040 Hb_002774_150--Hb_002485_040 Hb_012038_010 Hb_012038_010 Hb_002774_150--Hb_012038_010 Hb_172421_010 Hb_172421_010 Hb_002774_150--Hb_172421_010 Hb_004994_300 Hb_004994_300 Hb_002774_150--Hb_004994_300 Hb_012753_040 Hb_012753_040 Hb_002774_150--Hb_012753_040 Hb_004032_310--Hb_003752_120 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_001489_120 Hb_001489_120 Hb_004032_310--Hb_001489_120 Hb_004032_310--Hb_004994_300 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070 Hb_003752_120--Hb_012787_040 Hb_003752_120--Hb_002915_070 Hb_000069_780 Hb_000069_780 Hb_003752_120--Hb_000069_780 Hb_103788_010 Hb_103788_010 Hb_003752_120--Hb_103788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.10475 39.4657 15.6445 15.3287 7.87511 8.45426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13267 2.2109 1.40983 5.33001 6.88656

CAGE analysis