Hb_005571_010

Information

Type -
Description -
Location Contig5571: 26010-51770
Sequence    

Annotation

kegg
ID rcu:RCOM_1307010
description amine oxidase, putative (EC:1.14.99.30)
nr
ID XP_012078425.1
description PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
swissprot
ID Q07356
description 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=1 SV=1
trembl
ID A0A067K8K2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13116 PE=4 SV=1
Gene Ontology
ID GO:0009534
description phytoene desaturase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48603: 26148-32173 , PASA_asmbl_48604: 32236-51736 , PASA_asmbl_48607: 49117-49261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005571_010 0.0 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
2 Hb_023988_030 0.0566097604 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
3 Hb_002150_020 0.0634907189 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_106890_010 0.0669325846 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
5 Hb_003355_010 0.0686479479 - - Heat shock 70 kDa protein, putative [Ricinus communis]
6 Hb_005914_040 0.0718307551 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
7 Hb_055690_010 0.0720659015 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
8 Hb_030736_040 0.0758793159 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
9 Hb_004111_030 0.0824915488 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
10 Hb_002249_080 0.0826192456 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
11 Hb_001009_260 0.0849154404 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
12 Hb_001117_110 0.084983123 - - PREDICTED: dynamin-2A [Jatropha curcas]
13 Hb_005694_060 0.0852500336 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
14 Hb_013749_050 0.0862582683 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
15 Hb_003490_050 0.0887799299 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
16 Hb_015884_020 0.0917214625 - - PREDICTED: protein PIR [Jatropha curcas]
17 Hb_002828_060 0.0939399871 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
18 Hb_003490_060 0.0945325309 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
19 Hb_006916_050 0.0953736045 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
20 Hb_068804_090 0.0956507772 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]

Gene co-expression network

sample Hb_005571_010 Hb_005571_010 Hb_023988_030 Hb_023988_030 Hb_005571_010--Hb_023988_030 Hb_002150_020 Hb_002150_020 Hb_005571_010--Hb_002150_020 Hb_106890_010 Hb_106890_010 Hb_005571_010--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_005571_010--Hb_003355_010 Hb_005914_040 Hb_005914_040 Hb_005571_010--Hb_005914_040 Hb_055690_010 Hb_055690_010 Hb_005571_010--Hb_055690_010 Hb_023988_030--Hb_005914_040 Hb_023988_030--Hb_055690_010 Hb_023988_030--Hb_106890_010 Hb_001677_220 Hb_001677_220 Hb_023988_030--Hb_001677_220 Hb_011364_020 Hb_011364_020 Hb_023988_030--Hb_011364_020 Hb_004041_030 Hb_004041_030 Hb_002150_020--Hb_004041_030 Hb_002150_020--Hb_055690_010 Hb_001009_260 Hb_001009_260 Hb_002150_020--Hb_001009_260 Hb_032631_070 Hb_032631_070 Hb_002150_020--Hb_032631_070 Hb_005305_020 Hb_005305_020 Hb_002150_020--Hb_005305_020 Hb_106890_010--Hb_003355_010 Hb_030736_040 Hb_030736_040 Hb_106890_010--Hb_030736_040 Hb_003490_060 Hb_003490_060 Hb_106890_010--Hb_003490_060 Hb_007741_120 Hb_007741_120 Hb_106890_010--Hb_007741_120 Hb_019654_020 Hb_019654_020 Hb_106890_010--Hb_019654_020 Hb_003355_010--Hb_030736_040 Hb_000496_130 Hb_000496_130 Hb_003355_010--Hb_000496_130 Hb_003355_010--Hb_007741_120 Hb_003355_010--Hb_003490_060 Hb_006846_080 Hb_006846_080 Hb_005914_040--Hb_006846_080 Hb_009178_060 Hb_009178_060 Hb_005914_040--Hb_009178_060 Hb_005250_010 Hb_005250_010 Hb_005914_040--Hb_005250_010 Hb_000862_100 Hb_000862_100 Hb_005914_040--Hb_000862_100 Hb_000585_110 Hb_000585_110 Hb_055690_010--Hb_000585_110 Hb_055690_010--Hb_030736_040 Hb_000358_020 Hb_000358_020 Hb_055690_010--Hb_000358_020 Hb_008375_010 Hb_008375_010 Hb_055690_010--Hb_008375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.61545 7.56455 11.5685 13.7651 5.46069 5.00121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.69759 4.68701 4.87412 11.8689 25.2428

CAGE analysis