Hb_005582_040

Information

Type -
Description -
Location Contig5582: 91829-113054
Sequence    

Annotation

kegg
ID rcu:RCOM_0520190
description nonsense-mediated mRNA decay protein, putative
nr
ID XP_012075131.1
description PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
swissprot
ID Q9FJR0
description Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2
trembl
ID A0A067LBV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11864 PE=4 SV=1
Gene Ontology
ID GO:0005737
description regulator of nonsense transcripts 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48612: 91949-112844 , PASA_asmbl_48614: 99245-99619 , PASA_asmbl_48616: 96913-97166 , PASA_asmbl_48617: 96454-96748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005582_040 0.0 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
2 Hb_002830_010 0.0481340872 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
3 Hb_001304_110 0.0529277251 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
4 Hb_000640_040 0.0534453749 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
5 Hb_001716_040 0.0545916993 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
6 Hb_004030_080 0.0559767132 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
7 Hb_001635_120 0.0589588327 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
8 Hb_001157_240 0.0608999376 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
9 Hb_008948_020 0.0618033372 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
10 Hb_003943_110 0.0636466198 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
11 Hb_004679_030 0.0649380901 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
12 Hb_001999_290 0.0660585338 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
13 Hb_000028_130 0.06630787 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
14 Hb_001417_030 0.0663725199 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
15 Hb_010515_020 0.0678423676 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
16 Hb_005736_020 0.0687263257 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
17 Hb_002411_110 0.0702349107 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
18 Hb_004435_030 0.0704187077 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
19 Hb_000984_170 0.0710561997 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
20 Hb_000174_270 0.0713118579 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005582_040 Hb_005582_040 Hb_002830_010 Hb_002830_010 Hb_005582_040--Hb_002830_010 Hb_001304_110 Hb_001304_110 Hb_005582_040--Hb_001304_110 Hb_000640_040 Hb_000640_040 Hb_005582_040--Hb_000640_040 Hb_001716_040 Hb_001716_040 Hb_005582_040--Hb_001716_040 Hb_004030_080 Hb_004030_080 Hb_005582_040--Hb_004030_080 Hb_001635_120 Hb_001635_120 Hb_005582_040--Hb_001635_120 Hb_002830_010--Hb_004030_080 Hb_002071_070 Hb_002071_070 Hb_002830_010--Hb_002071_070 Hb_010515_020 Hb_010515_020 Hb_002830_010--Hb_010515_020 Hb_010068_080 Hb_010068_080 Hb_002830_010--Hb_010068_080 Hb_002830_010--Hb_001304_110 Hb_001304_110--Hb_010068_080 Hb_005686_090 Hb_005686_090 Hb_001304_110--Hb_005686_090 Hb_001999_290 Hb_001999_290 Hb_001304_110--Hb_001999_290 Hb_011386_010 Hb_011386_010 Hb_001304_110--Hb_011386_010 Hb_005054_110 Hb_005054_110 Hb_001304_110--Hb_005054_110 Hb_000640_040--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_000640_040--Hb_002542_110 Hb_001157_240 Hb_001157_240 Hb_000640_040--Hb_001157_240 Hb_000640_040--Hb_010068_080 Hb_000640_040--Hb_001304_110 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_003943_110 Hb_003943_110 Hb_001716_040--Hb_003943_110 Hb_000504_180 Hb_000504_180 Hb_001716_040--Hb_000504_180 Hb_000984_170 Hb_000984_170 Hb_004030_080--Hb_000984_170 Hb_006452_120 Hb_006452_120 Hb_004030_080--Hb_006452_120 Hb_000028_130 Hb_000028_130 Hb_004030_080--Hb_000028_130 Hb_011016_050 Hb_011016_050 Hb_004030_080--Hb_011016_050 Hb_001635_120--Hb_000028_130 Hb_000017_220 Hb_000017_220 Hb_001635_120--Hb_000017_220 Hb_000174_270 Hb_000174_270 Hb_001635_120--Hb_000174_270 Hb_001635_120--Hb_001999_290 Hb_001473_110 Hb_001473_110 Hb_001635_120--Hb_001473_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.57031 17.1751 11.5493 16.2169 9.64104 14.3631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4813 12.5401 15.9583 16.4806 21.455

CAGE analysis