Hb_005588_010

Information

Type -
Description -
Location Contig5588: 1088-3173
Sequence    

Annotation

kegg
ID tcc:TCM_033883
description Phospholipase A 2A, IIA,PLA2A isoform 1
nr
ID XP_012071689.1
description PREDICTED: patatin-like protein 2 [Jatropha curcas]
swissprot
ID O48723
description Patatin-like protein 2 OS=Arabidopsis thaliana GN=PLP2 PE=1 SV=1
trembl
ID B9R7G4
description Patatin OS=Ricinus communis GN=RCOM_1591450 PE=3 SV=1
Gene Ontology
ID GO:0016787
description patatin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48619: 1160-2046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_010 0.0 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
2 Hb_005643_020 0.0761792139 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
3 Hb_001405_260 0.0831675505 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
4 Hb_005648_030 0.0948846522 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
5 Hb_000522_120 0.1038323812 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
6 Hb_033153_010 0.1123764914 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
7 Hb_022630_010 0.1151651297 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
8 Hb_000563_380 0.1154212563 - - hypothetical protein CICLE_v10007206mg [Citrus clementina]
9 Hb_007328_010 0.1162643747 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
10 Hb_078477_010 0.1192096906 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
11 Hb_000959_290 0.1218883043 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
12 Hb_031862_150 0.1227442461 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
13 Hb_044026_010 0.1254239389 - - PREDICTED: cytochrome P450 93A3-like [Jatropha curcas]
14 Hb_189242_010 0.1255823774 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
15 Hb_089140_020 0.1279357734 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_055706_010 0.1286911716 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
17 Hb_007850_050 0.1317567402 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
18 Hb_001437_200 0.1317870032 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
19 Hb_000414_100 0.1340493088 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
20 Hb_002193_050 0.1385332243 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]

Gene co-expression network

sample Hb_005588_010 Hb_005588_010 Hb_005643_020 Hb_005643_020 Hb_005588_010--Hb_005643_020 Hb_001405_260 Hb_001405_260 Hb_005588_010--Hb_001405_260 Hb_005648_030 Hb_005648_030 Hb_005588_010--Hb_005648_030 Hb_000522_120 Hb_000522_120 Hb_005588_010--Hb_000522_120 Hb_033153_010 Hb_033153_010 Hb_005588_010--Hb_033153_010 Hb_022630_010 Hb_022630_010 Hb_005588_010--Hb_022630_010 Hb_005643_020--Hb_001405_260 Hb_005643_020--Hb_000522_120 Hb_005643_020--Hb_005648_030 Hb_044026_010 Hb_044026_010 Hb_005643_020--Hb_044026_010 Hb_002193_050 Hb_002193_050 Hb_005643_020--Hb_002193_050 Hb_001405_260--Hb_044026_010 Hb_001405_260--Hb_005648_030 Hb_078477_010 Hb_078477_010 Hb_001405_260--Hb_078477_010 Hb_001405_260--Hb_022630_010 Hb_005648_030--Hb_078477_010 Hb_005648_030--Hb_022630_010 Hb_005648_030--Hb_044026_010 Hb_005648_030--Hb_033153_010 Hb_141990_050 Hb_141990_050 Hb_000522_120--Hb_141990_050 Hb_031862_150 Hb_031862_150 Hb_000522_120--Hb_031862_150 Hb_007328_010 Hb_007328_010 Hb_000522_120--Hb_007328_010 Hb_022768_010 Hb_022768_010 Hb_000522_120--Hb_022768_010 Hb_000414_100 Hb_000414_100 Hb_033153_010--Hb_000414_100 Hb_002760_060 Hb_002760_060 Hb_033153_010--Hb_002760_060 Hb_033153_010--Hb_001405_260 Hb_007850_050 Hb_007850_050 Hb_033153_010--Hb_007850_050 Hb_022630_010--Hb_078477_010 Hb_004656_030 Hb_004656_030 Hb_022630_010--Hb_004656_030 Hb_027913_010 Hb_027913_010 Hb_022630_010--Hb_027913_010 Hb_022630_010--Hb_002193_050 Hb_001403_070 Hb_001403_070 Hb_022630_010--Hb_001403_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.66676 0.433254 0.292697 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.158509 0.155693

CAGE analysis