Hb_005588_020

Information

Type -
Description -
Location Contig5588: 21854-23966
Sequence    

Annotation

kegg
ID rcu:RCOM_1591450
description Patatin T5 precursor, putative
nr
ID XP_002282481.1
description PREDICTED: patatin-like protein 2 [Vitis vinifera]
swissprot
ID Q8H133
description Patatin-like protein 8 OS=Arabidopsis thaliana GN=PLP8 PE=2 SV=1
trembl
ID F6H012
description Patatin OS=Vitis vinifera GN=VIT_18s0001g10910 PE=3 SV=1
Gene Ontology
ID GO:0016787
description patatin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48620: 21802-23966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_020 0.0 - - PREDICTED: patatin-like protein 2 [Vitis vinifera]
2 Hb_000070_140 0.1199292757 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_001486_130 0.1331497198 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
4 Hb_012268_010 0.1451087677 - - glutamic acid-rich protein [Manihot esculenta]
5 Hb_001268_070 0.1502052169 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005054_300 0.15128519 - - aquaporin [Hevea brasiliensis]
7 Hb_000977_160 0.1516169331 - - Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
8 Hb_008707_020 0.1533741589 - - ATP binding protein, putative [Ricinus communis]
9 Hb_001376_020 0.1534026406 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
10 Hb_002294_010 0.1560578506 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
11 Hb_000035_360 0.156363443 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
12 Hb_003636_010 0.1569425304 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
13 Hb_001810_010 0.1573938225 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
14 Hb_002648_020 0.1609965305 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
15 Hb_012553_010 0.1620623999 - - hypothetical protein JCGZ_10552 [Jatropha curcas]
16 Hb_001363_030 0.1682310186 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
17 Hb_002025_370 0.1684656154 - - monooxygenase, putative [Ricinus communis]
18 Hb_001363_010 0.1715512549 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
19 Hb_006353_010 0.1725510383 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
20 Hb_118777_010 0.1739725853 - - leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005588_020 Hb_005588_020 Hb_000070_140 Hb_000070_140 Hb_005588_020--Hb_000070_140 Hb_001486_130 Hb_001486_130 Hb_005588_020--Hb_001486_130 Hb_012268_010 Hb_012268_010 Hb_005588_020--Hb_012268_010 Hb_001268_070 Hb_001268_070 Hb_005588_020--Hb_001268_070 Hb_005054_300 Hb_005054_300 Hb_005588_020--Hb_005054_300 Hb_000977_160 Hb_000977_160 Hb_005588_020--Hb_000977_160 Hb_002294_010 Hb_002294_010 Hb_000070_140--Hb_002294_010 Hb_003636_010 Hb_003636_010 Hb_000070_140--Hb_003636_010 Hb_000070_140--Hb_012268_010 Hb_118777_010 Hb_118777_010 Hb_000070_140--Hb_118777_010 Hb_012553_010 Hb_012553_010 Hb_000070_140--Hb_012553_010 Hb_001376_020 Hb_001376_020 Hb_001486_130--Hb_001376_020 Hb_001749_020 Hb_001749_020 Hb_001486_130--Hb_001749_020 Hb_008707_020 Hb_008707_020 Hb_001486_130--Hb_008707_020 Hb_001403_070 Hb_001403_070 Hb_001486_130--Hb_001403_070 Hb_004931_050 Hb_004931_050 Hb_001486_130--Hb_004931_050 Hb_000035_360 Hb_000035_360 Hb_001486_130--Hb_000035_360 Hb_000535_030 Hb_000535_030 Hb_012268_010--Hb_000535_030 Hb_001363_010 Hb_001363_010 Hb_012268_010--Hb_001363_010 Hb_012268_010--Hb_003636_010 Hb_001810_010 Hb_001810_010 Hb_012268_010--Hb_001810_010 Hb_003117_060 Hb_003117_060 Hb_012268_010--Hb_003117_060 Hb_001268_070--Hb_012553_010 Hb_124207_010 Hb_124207_010 Hb_001268_070--Hb_124207_010 Hb_166257_010 Hb_166257_010 Hb_001268_070--Hb_166257_010 Hb_002648_020 Hb_002648_020 Hb_001268_070--Hb_002648_020 Hb_001268_070--Hb_000070_140 Hb_009297_010 Hb_009297_010 Hb_001268_070--Hb_009297_010 Hb_111985_060 Hb_111985_060 Hb_005054_300--Hb_111985_060 Hb_011054_030 Hb_011054_030 Hb_005054_300--Hb_011054_030 Hb_003090_060 Hb_003090_060 Hb_005054_300--Hb_003090_060 Hb_009778_030 Hb_009778_030 Hb_005054_300--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_005054_300--Hb_000123_310 Hb_002219_090 Hb_002219_090 Hb_005054_300--Hb_002219_090 Hb_005396_100 Hb_005396_100 Hb_000977_160--Hb_005396_100 Hb_000977_160--Hb_001363_010 Hb_002067_110 Hb_002067_110 Hb_000977_160--Hb_002067_110 Hb_006353_010 Hb_006353_010 Hb_000977_160--Hb_006353_010 Hb_000844_020 Hb_000844_020 Hb_000977_160--Hb_000844_020 Hb_123238_010 Hb_123238_010 Hb_000977_160--Hb_123238_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.30362 0.1807 0.0535801 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0948518 0 0 0.844066 0.0520143

CAGE analysis