Hb_005588_050

Information

Type -
Description -
Location Contig5588: 40701-44821
Sequence    

Annotation

kegg
ID rcu:RCOM_1591260
description hypothetical protein
nr
ID XP_002510248.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7F5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1591260 PE=4 SV=1
Gene Ontology
ID GO:0042546
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 008_E18r.ab1: 42248-43389

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004158_040 0.0659135796 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
3 Hb_001541_170 0.0753807623 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
4 Hb_001722_110 0.0836152978 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
5 Hb_001579_160 0.086916134 - - PREDICTED: kininogen-1-like [Jatropha curcas]
6 Hb_012787_020 0.0926842596 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
7 Hb_000580_210 0.0940075411 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
8 Hb_005183_070 0.0948923355 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
9 Hb_007545_220 0.0953756616 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
10 Hb_000197_260 0.0980554864 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
11 Hb_010217_020 0.1022362642 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
12 Hb_000853_140 0.1026270443 - - hypothetical protein POPTR_0014s12080g [Populus trichocarpa]
13 Hb_006618_100 0.1029162798 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
14 Hb_009421_060 0.1031637679 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
15 Hb_000173_180 0.10396415 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
16 Hb_000953_110 0.1043500907 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
17 Hb_001454_350 0.1070616774 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
18 Hb_001712_010 0.1098326436 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
19 Hb_000599_160 0.1107782733 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
20 Hb_012217_010 0.1129954216 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]

Gene co-expression network

sample Hb_005588_050 Hb_005588_050 Hb_004158_040 Hb_004158_040 Hb_005588_050--Hb_004158_040 Hb_001541_170 Hb_001541_170 Hb_005588_050--Hb_001541_170 Hb_001722_110 Hb_001722_110 Hb_005588_050--Hb_001722_110 Hb_001579_160 Hb_001579_160 Hb_005588_050--Hb_001579_160 Hb_012787_020 Hb_012787_020 Hb_005588_050--Hb_012787_020 Hb_000580_210 Hb_000580_210 Hb_005588_050--Hb_000580_210 Hb_004158_040--Hb_001579_160 Hb_004158_040--Hb_001722_110 Hb_001454_350 Hb_001454_350 Hb_004158_040--Hb_001454_350 Hb_010217_020 Hb_010217_020 Hb_004158_040--Hb_010217_020 Hb_006618_100 Hb_006618_100 Hb_004158_040--Hb_006618_100 Hb_001541_170--Hb_001579_160 Hb_000098_230 Hb_000098_230 Hb_001541_170--Hb_000098_230 Hb_009421_060 Hb_009421_060 Hb_001541_170--Hb_009421_060 Hb_007919_010 Hb_007919_010 Hb_001541_170--Hb_007919_010 Hb_001541_170--Hb_004158_040 Hb_003638_020 Hb_003638_020 Hb_001722_110--Hb_003638_020 Hb_001722_110--Hb_001579_160 Hb_001722_110--Hb_001454_350 Hb_000339_060 Hb_000339_060 Hb_001722_110--Hb_000339_060 Hb_001579_160--Hb_009421_060 Hb_001579_160--Hb_001454_350 Hb_180088_010 Hb_180088_010 Hb_001579_160--Hb_180088_010 Hb_071079_040 Hb_071079_040 Hb_012787_020--Hb_071079_040 Hb_000645_080 Hb_000645_080 Hb_012787_020--Hb_000645_080 Hb_028514_010 Hb_028514_010 Hb_012787_020--Hb_028514_010 Hb_012787_020--Hb_001541_170 Hb_115572_010 Hb_115572_010 Hb_012787_020--Hb_115572_010 Hb_000482_080 Hb_000482_080 Hb_000580_210--Hb_000482_080 Hb_000173_180 Hb_000173_180 Hb_000580_210--Hb_000173_180 Hb_000580_210--Hb_004158_040 Hb_000991_060 Hb_000991_060 Hb_000580_210--Hb_000991_060 Hb_000580_210--Hb_001541_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0251535 4.59841 1.91881 34.1784 0.23584 0.0288556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0577213 0 0.0829415 0.256257 7.27781

CAGE analysis