Hb_005588_060

Information

Type -
Description -
Location Contig5588: 41332-43518
Sequence    

Annotation

kegg
ID tcc:TCM_033877
description Succinate dehydrogenase 5
nr
ID XP_012071684.1
description PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
swissprot
ID Q9SX77
description Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana GN=SDH5 PE=1 SV=1
trembl
ID A0A067L1L3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04300 PE=4 SV=1
Gene Ontology
ID GO:0005634
description succinate dehydrogenase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48624: 41349-43400
cDNA
(Sanger)
(ID:Location)		 008_E18.ab1: 41349-42726 , 025_J12.ab1: 43130-43275 , 043_K23.ab1: 41426-42720

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_060 0.0 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
2 Hb_003058_120 0.0526789706 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
3 Hb_002936_010 0.0598689829 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
4 Hb_006570_080 0.0605236357 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
5 Hb_004108_220 0.0654197406 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
6 Hb_000173_280 0.0655193595 - - Speckle-type POZ protein, putative [Ricinus communis]
7 Hb_023001_040 0.0658943262 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
8 Hb_000853_150 0.0661507545 - - Fumarase 1 isoform 2 [Theobroma cacao]
9 Hb_000460_030 0.0678603616 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
10 Hb_000392_420 0.0705619087 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
11 Hb_001301_110 0.0707612825 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
12 Hb_000069_720 0.0720722302 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
13 Hb_168978_010 0.0735840305 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
14 Hb_002301_150 0.076807947 - - Drought-responsive family protein [Theobroma cacao]
15 Hb_000778_010 0.0770203152 - - hypothetical protein [Bacillus subtilis]
16 Hb_004157_050 0.0785210309 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
17 Hb_001278_100 0.078678717 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
18 Hb_011218_090 0.0805489933 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
19 Hb_000359_060 0.082252859 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
20 Hb_000312_080 0.0824873298 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]

Gene co-expression network

sample Hb_005588_060 Hb_005588_060 Hb_003058_120 Hb_003058_120 Hb_005588_060--Hb_003058_120 Hb_002936_010 Hb_002936_010 Hb_005588_060--Hb_002936_010 Hb_006570_080 Hb_006570_080 Hb_005588_060--Hb_006570_080 Hb_004108_220 Hb_004108_220 Hb_005588_060--Hb_004108_220 Hb_000173_280 Hb_000173_280 Hb_005588_060--Hb_000173_280 Hb_023001_040 Hb_023001_040 Hb_005588_060--Hb_023001_040 Hb_000853_150 Hb_000853_150 Hb_003058_120--Hb_000853_150 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_000167_010 Hb_000167_010 Hb_003058_120--Hb_000167_010 Hb_004157_050 Hb_004157_050 Hb_003058_120--Hb_004157_050 Hb_024958_010 Hb_024958_010 Hb_002936_010--Hb_024958_010 Hb_002936_010--Hb_006570_080 Hb_001359_050 Hb_001359_050 Hb_002936_010--Hb_001359_050 Hb_000720_040 Hb_000720_040 Hb_002936_010--Hb_000720_040 Hb_003994_230 Hb_003994_230 Hb_002936_010--Hb_003994_230 Hb_006570_080--Hb_001359_050 Hb_006570_080--Hb_000173_280 Hb_000460_030 Hb_000460_030 Hb_006570_080--Hb_000460_030 Hb_168978_010 Hb_168978_010 Hb_006570_080--Hb_168978_010 Hb_002301_150 Hb_002301_150 Hb_004108_220--Hb_002301_150 Hb_149985_010 Hb_149985_010 Hb_004108_220--Hb_149985_010 Hb_004108_220--Hb_168978_010 Hb_000365_270 Hb_000365_270 Hb_004108_220--Hb_000365_270 Hb_012022_040 Hb_012022_040 Hb_004108_220--Hb_012022_040 Hb_001221_430 Hb_001221_430 Hb_000173_280--Hb_001221_430 Hb_000173_280--Hb_001359_050 Hb_164390_010 Hb_164390_010 Hb_000173_280--Hb_164390_010 Hb_000778_010 Hb_000778_010 Hb_000173_280--Hb_000778_010 Hb_023001_040--Hb_149985_010 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_023001_040--Hb_001828_180 Hb_023001_040--Hb_000167_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.5629 50.7475 67.8022 82.7425 38.9315 35.6766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.8429 84.7126 50.8494 76.5745 42.5458

CAGE analysis