Hb_005588_080

Information

Type -
Description -
Location Contig5588: 49010-54768
Sequence    

Annotation

kegg
ID rcu:RCOM_1591230
description hypothetical protein
nr
ID XP_012071682.1
description PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04297 PE=4 SV=1
Gene Ontology
ID GO:0005794
description adenosine trna methylthiotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48630: 49142-54477
cDNA
(Sanger)
(ID:Location)		 008_C09.ab1: 49238-50049 , 041_C19.ab1: 49229-50049

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_080 0.0 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
2 Hb_000230_400 0.0551142566 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000059_380 0.0614319152 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
4 Hb_003428_010 0.0620155547 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
5 Hb_003513_010 0.0638735694 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
6 Hb_003861_060 0.0646157403 - - PREDICTED: treacle protein [Jatropha curcas]
7 Hb_007007_120 0.065230627 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
8 Hb_014834_150 0.0673206461 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_009296_070 0.0680874189 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
10 Hb_000212_230 0.0692577015 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
11 Hb_007765_100 0.0717948362 - - PREDICTED: helicase SKI2W [Jatropha curcas]
12 Hb_000699_030 0.0722040709 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
13 Hb_000304_070 0.0730278686 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
14 Hb_003878_090 0.0750006834 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
15 Hb_004052_080 0.0755739842 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001623_270 0.0759997413 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
17 Hb_000869_020 0.0773630848 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
18 Hb_000816_250 0.0790825363 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
19 Hb_002849_130 0.0812377584 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
20 Hb_021374_030 0.0816445315 - - hypothetical protein RCOM_0351490 [Ricinus communis]

Gene co-expression network

sample Hb_005588_080 Hb_005588_080 Hb_000230_400 Hb_000230_400 Hb_005588_080--Hb_000230_400 Hb_000059_380 Hb_000059_380 Hb_005588_080--Hb_000059_380 Hb_003428_010 Hb_003428_010 Hb_005588_080--Hb_003428_010 Hb_003513_010 Hb_003513_010 Hb_005588_080--Hb_003513_010 Hb_003861_060 Hb_003861_060 Hb_005588_080--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_005588_080--Hb_007007_120 Hb_000375_390 Hb_000375_390 Hb_000230_400--Hb_000375_390 Hb_000292_100 Hb_000292_100 Hb_000230_400--Hb_000292_100 Hb_001623_270 Hb_001623_270 Hb_000230_400--Hb_001623_270 Hb_000230_400--Hb_000059_380 Hb_000035_090 Hb_000035_090 Hb_000230_400--Hb_000035_090 Hb_002205_230 Hb_002205_230 Hb_000059_380--Hb_002205_230 Hb_010068_080 Hb_010068_080 Hb_000059_380--Hb_010068_080 Hb_000059_380--Hb_007007_120 Hb_000699_030 Hb_000699_030 Hb_000059_380--Hb_000699_030 Hb_004052_080 Hb_004052_080 Hb_003428_010--Hb_004052_080 Hb_003428_010--Hb_007007_120 Hb_003849_110 Hb_003849_110 Hb_003428_010--Hb_003849_110 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_003428_010--Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003428_010--Hb_014834_150 Hb_003513_010--Hb_004052_080 Hb_000137_040 Hb_000137_040 Hb_003513_010--Hb_000137_040 Hb_003513_010--Hb_014834_150 Hb_000869_020 Hb_000869_020 Hb_003513_010--Hb_000869_020 Hb_003513_010--Hb_003861_060 Hb_003513_010--Hb_007007_120 Hb_003861_060--Hb_014834_150 Hb_003861_060--Hb_004052_080 Hb_164390_010 Hb_164390_010 Hb_003861_060--Hb_164390_010 Hb_000392_420 Hb_000392_420 Hb_003861_060--Hb_000392_420 Hb_007007_120--Hb_004052_080 Hb_002876_230 Hb_002876_230 Hb_007007_120--Hb_002876_230 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_000339_040 Hb_000339_040 Hb_007007_120--Hb_000339_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1912 12.5263 19.4064 13.9294 11.3523 9.39247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7526 14.9484 13.2623 12.092 20.4553

CAGE analysis