Hb_005588_090

Information

Type -
Description -
Location Contig5588: 64782-72020
Sequence    

Annotation

kegg
ID cic:CICLE_v10003480mg
description hypothetical protein
nr
ID XP_006434800.1
description hypothetical protein CICLE_v10003480mg [Citrus clementina]
swissprot
ID P73212
description Putative dihydroflavonol-4-reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dfrA PE=3 SV=1
trembl
ID V4T957
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003480mg PE=4 SV=1
Gene Ontology
ID GO:0005777
description dihydroflavonol-4-reductase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48632: 64951-68682 , PASA_asmbl_48633: 69864-72027
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_090 0.0 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
2 Hb_004267_040 0.0571932077 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
3 Hb_116349_070 0.0573700798 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
4 Hb_005289_040 0.0573701328 - - poly(A) polymerase, putative [Ricinus communis]
5 Hb_004785_100 0.0617272546 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000089_120 0.0643930085 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_001821_160 0.0656537968 - - serine/arginine rich splicing factor, putative [Ricinus communis]
8 Hb_000163_220 0.0667787662 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
9 Hb_002835_230 0.0671309241 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
10 Hb_005618_050 0.0677491721 - - PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]
11 Hb_001433_070 0.067805993 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
12 Hb_008103_070 0.0694305622 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
13 Hb_000011_100 0.0701824179 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
14 Hb_003861_050 0.071344972 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
15 Hb_000928_220 0.0721209372 - - PREDICTED: protein SCAI [Jatropha curcas]
16 Hb_143629_150 0.0727776411 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
17 Hb_001235_140 0.0734271019 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
18 Hb_000120_430 0.0735310836 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
19 Hb_001089_070 0.0736202423 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
20 Hb_002375_010 0.0744601696 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005588_090 Hb_005588_090 Hb_004267_040 Hb_004267_040 Hb_005588_090--Hb_004267_040 Hb_116349_070 Hb_116349_070 Hb_005588_090--Hb_116349_070 Hb_005289_040 Hb_005289_040 Hb_005588_090--Hb_005289_040 Hb_004785_100 Hb_004785_100 Hb_005588_090--Hb_004785_100 Hb_000089_120 Hb_000089_120 Hb_005588_090--Hb_000089_120 Hb_001821_160 Hb_001821_160 Hb_005588_090--Hb_001821_160 Hb_000011_100 Hb_000011_100 Hb_004267_040--Hb_000011_100 Hb_000120_280 Hb_000120_280 Hb_004267_040--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_004267_040--Hb_000563_130 Hb_000398_080 Hb_000398_080 Hb_004267_040--Hb_000398_080 Hb_000603_030 Hb_000603_030 Hb_004267_040--Hb_000603_030 Hb_116349_070--Hb_000089_120 Hb_116349_070--Hb_004267_040 Hb_116349_070--Hb_000120_280 Hb_000617_100 Hb_000617_100 Hb_116349_070--Hb_000617_100 Hb_000120_430 Hb_000120_430 Hb_116349_070--Hb_000120_430 Hb_003638_090 Hb_003638_090 Hb_005289_040--Hb_003638_090 Hb_005289_040--Hb_000398_080 Hb_002805_190 Hb_002805_190 Hb_005289_040--Hb_002805_190 Hb_000134_270 Hb_000134_270 Hb_005289_040--Hb_000134_270 Hb_154580_010 Hb_154580_010 Hb_005289_040--Hb_154580_010 Hb_131646_010 Hb_131646_010 Hb_004785_100--Hb_131646_010 Hb_002835_230 Hb_002835_230 Hb_004785_100--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_004785_100--Hb_002686_250 Hb_004785_100--Hb_001821_160 Hb_006960_050 Hb_006960_050 Hb_004785_100--Hb_006960_050 Hb_002078_110 Hb_002078_110 Hb_004785_100--Hb_002078_110 Hb_000261_240 Hb_000261_240 Hb_000089_120--Hb_000261_240 Hb_007657_020 Hb_007657_020 Hb_000089_120--Hb_007657_020 Hb_002784_020 Hb_002784_020 Hb_000089_120--Hb_002784_020 Hb_000089_120--Hb_000398_080 Hb_000331_110 Hb_000331_110 Hb_001821_160--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_001821_160--Hb_079526_030 Hb_012753_170 Hb_012753_170 Hb_001821_160--Hb_012753_170 Hb_022256_060 Hb_022256_060 Hb_001821_160--Hb_022256_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5948 13.7408 16.0287 13.1767 21.1651 15.6883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1087 10.9638 7.52998 16.9288 10.0982

CAGE analysis