Hb_005588_100

Information

Type -
Description -
Location Contig5588: 77817-82982
Sequence    

Annotation

kegg
ID rcu:RCOM_1591100
description protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002510242.1
description protein phosphatase, putative [Ricinus communis]
swissprot
ID Q9FX08
description Probable protein phosphatase 2C 12 OS=Arabidopsis thaliana GN=At1g47380 PE=2 SV=1
trembl
ID B9R7E9
description Protein phosphatase, putative OS=Ricinus communis GN=RCOM_1591100 PE=4 SV=1
Gene Ontology
ID GO:0005739
description probable protein phosphatase 2c 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48634: 77841-82866 , PASA_asmbl_48635: 77841-82312 , PASA_asmbl_48636: 81028-81800 , PASA_asmbl_48637: 81340-81450
cDNA
(Sanger)
(ID:Location)		 037_B23.ab1: 80603-82327 , 051_K12.ab1: 80616-82044

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_100 0.0 - - protein phosphatase, putative [Ricinus communis]
2 Hb_007943_150 0.1071155864 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
3 Hb_000496_130 0.1122199164 - - PREDICTED: fructokinase-1 [Jatropha curcas]
4 Hb_001564_070 0.1140220128 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
5 Hb_002811_200 0.1219354846 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
6 Hb_001434_020 0.1237252968 - - hypothetical protein RCOM_0841800 [Ricinus communis]
7 Hb_000230_530 0.1285403079 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000890_080 0.1289886177 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
9 Hb_003529_040 0.1352500112 - - PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Jatropha curcas]
10 Hb_004586_160 0.1367748392 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
11 Hb_002392_020 0.1375482052 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
12 Hb_003355_010 0.1377001846 - - Heat shock 70 kDa protein, putative [Ricinus communis]
13 Hb_014497_060 0.1388947815 - - phosphofructokinase, putative [Ricinus communis]
14 Hb_009296_020 0.1393248444 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
15 Hb_101334_020 0.1424278621 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
16 Hb_000365_200 0.1445491146 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
17 Hb_000265_070 0.1452581079 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
18 Hb_022092_010 0.1463130363 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
19 Hb_002902_140 0.1467820172 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
20 Hb_106890_010 0.1488438977 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005588_100 Hb_005588_100 Hb_007943_150 Hb_007943_150 Hb_005588_100--Hb_007943_150 Hb_000496_130 Hb_000496_130 Hb_005588_100--Hb_000496_130 Hb_001564_070 Hb_001564_070 Hb_005588_100--Hb_001564_070 Hb_002811_200 Hb_002811_200 Hb_005588_100--Hb_002811_200 Hb_001434_020 Hb_001434_020 Hb_005588_100--Hb_001434_020 Hb_000230_530 Hb_000230_530 Hb_005588_100--Hb_000230_530 Hb_007943_150--Hb_001434_020 Hb_002392_020 Hb_002392_020 Hb_007943_150--Hb_002392_020 Hb_007943_150--Hb_000496_130 Hb_000265_070 Hb_000265_070 Hb_007943_150--Hb_000265_070 Hb_000696_190 Hb_000696_190 Hb_007943_150--Hb_000696_190 Hb_003355_010 Hb_003355_010 Hb_000496_130--Hb_003355_010 Hb_001143_100 Hb_001143_100 Hb_000496_130--Hb_001143_100 Hb_025194_090 Hb_025194_090 Hb_000496_130--Hb_025194_090 Hb_004710_020 Hb_004710_020 Hb_000496_130--Hb_004710_020 Hb_000510_190 Hb_000510_190 Hb_000496_130--Hb_000510_190 Hb_001504_060 Hb_001504_060 Hb_001564_070--Hb_001504_060 Hb_000125_180 Hb_000125_180 Hb_001564_070--Hb_000125_180 Hb_000922_260 Hb_000922_260 Hb_001564_070--Hb_000922_260 Hb_005854_040 Hb_005854_040 Hb_001564_070--Hb_005854_040 Hb_004291_040 Hb_004291_040 Hb_001564_070--Hb_004291_040 Hb_012325_010 Hb_012325_010 Hb_001564_070--Hb_012325_010 Hb_002811_200--Hb_001143_100 Hb_001425_010 Hb_001425_010 Hb_002811_200--Hb_001425_010 Hb_002811_200--Hb_000230_530 Hb_002811_190 Hb_002811_190 Hb_002811_200--Hb_002811_190 Hb_000890_080 Hb_000890_080 Hb_002811_200--Hb_000890_080 Hb_000997_290 Hb_000997_290 Hb_002811_200--Hb_000997_290 Hb_001677_100 Hb_001677_100 Hb_001434_020--Hb_001677_100 Hb_001434_020--Hb_002392_020 Hb_009296_020 Hb_009296_020 Hb_001434_020--Hb_009296_020 Hb_000358_210 Hb_000358_210 Hb_001434_020--Hb_000358_210 Hb_070624_010 Hb_070624_010 Hb_001434_020--Hb_070624_010 Hb_101334_020 Hb_101334_020 Hb_000230_530--Hb_101334_020 Hb_000230_530--Hb_009296_020 Hb_002010_090 Hb_002010_090 Hb_000230_530--Hb_002010_090 Hb_000594_060 Hb_000594_060 Hb_000230_530--Hb_000594_060 Hb_000230_530--Hb_000510_190 Hb_000230_530--Hb_000496_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.40697 2.99392 14.5654 8.86104 2.93352 2.62855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18005 2.70265 4.37752 16.7786 17.9375

CAGE analysis