Hb_005588_120

Information

Type -
Description -
Location Contig5588: 91097-116638
Sequence    

Annotation

kegg
ID rcu:RCOM_1590980
description hypothetical protein
nr
ID XP_002510240.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FMN2
description Phosphatidate phosphatase PAH2 OS=Arabidopsis thaliana GN=PAH2 PE=1 SV=1
trembl
ID B9R7E7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1590980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48641: 90140-90431 , PASA_asmbl_48644: 93988-98119 , PASA_asmbl_48646: 100014-103146 , PASA_asmbl_48648: 103771-116748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004129_010 0.0749372905 - - aspartate aminotransferase, putative [Ricinus communis]
3 Hb_000416_060 0.0833174017 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
4 Hb_132840_030 0.085959422 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
5 Hb_000256_160 0.0884051492 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
6 Hb_001235_130 0.0905781421 - - -
7 Hb_000340_220 0.0957541263 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001699_170 0.0986678529 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003581_130 0.1000002535 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_000800_010 0.1020193105 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
11 Hb_007229_050 0.1081770033 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
12 Hb_000066_040 0.1105973218 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
13 Hb_000157_140 0.1133571695 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_026698_020 0.1139594243 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
15 Hb_001404_090 0.1141879695 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
16 Hb_000094_150 0.1142526166 - - -
17 Hb_001124_140 0.11824149 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
18 Hb_001307_200 0.1193021833 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
19 Hb_011174_080 0.1215096615 - - PREDICTED: sulfite oxidase [Jatropha curcas]
20 Hb_004030_060 0.121689038 - - receptor protein kinase zmpk1, putative [Ricinus communis]

Gene co-expression network

sample Hb_005588_120 Hb_005588_120 Hb_004129_010 Hb_004129_010 Hb_005588_120--Hb_004129_010 Hb_000416_060 Hb_000416_060 Hb_005588_120--Hb_000416_060 Hb_132840_030 Hb_132840_030 Hb_005588_120--Hb_132840_030 Hb_000256_160 Hb_000256_160 Hb_005588_120--Hb_000256_160 Hb_001235_130 Hb_001235_130 Hb_005588_120--Hb_001235_130 Hb_000340_220 Hb_000340_220 Hb_005588_120--Hb_000340_220 Hb_001754_050 Hb_001754_050 Hb_004129_010--Hb_001754_050 Hb_007229_050 Hb_007229_050 Hb_004129_010--Hb_007229_050 Hb_004129_010--Hb_000256_160 Hb_000157_140 Hb_000157_140 Hb_004129_010--Hb_000157_140 Hb_003030_010 Hb_003030_010 Hb_004129_010--Hb_003030_010 Hb_001699_170 Hb_001699_170 Hb_000416_060--Hb_001699_170 Hb_000800_010 Hb_000800_010 Hb_000416_060--Hb_000800_010 Hb_019654_110 Hb_019654_110 Hb_000416_060--Hb_019654_110 Hb_001404_090 Hb_001404_090 Hb_000416_060--Hb_001404_090 Hb_000416_060--Hb_132840_030 Hb_006949_060 Hb_006949_060 Hb_132840_030--Hb_006949_060 Hb_001514_240 Hb_001514_240 Hb_132840_030--Hb_001514_240 Hb_026698_020 Hb_026698_020 Hb_132840_030--Hb_026698_020 Hb_000227_320 Hb_000227_320 Hb_132840_030--Hb_000227_320 Hb_132840_030--Hb_001404_090 Hb_000256_160--Hb_001235_130 Hb_003226_090 Hb_003226_090 Hb_000256_160--Hb_003226_090 Hb_000094_150 Hb_000094_150 Hb_000256_160--Hb_000094_150 Hb_002010_090 Hb_002010_090 Hb_000256_160--Hb_002010_090 Hb_011174_080 Hb_011174_080 Hb_001235_130--Hb_011174_080 Hb_001235_130--Hb_007229_050 Hb_005854_040 Hb_005854_040 Hb_001235_130--Hb_005854_040 Hb_009535_030 Hb_009535_030 Hb_001235_130--Hb_009535_030 Hb_000804_020 Hb_000804_020 Hb_000340_220--Hb_000804_020 Hb_003581_130 Hb_003581_130 Hb_000340_220--Hb_003581_130 Hb_000340_220--Hb_004129_010 Hb_001865_100 Hb_001865_100 Hb_000340_220--Hb_001865_100 Hb_000007_410 Hb_000007_410 Hb_000340_220--Hb_000007_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.513426 6.4609 4.58661 6.44774 0.671353 0.880449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.929941 1.21352 1.42222 5.35953 7.36843

CAGE analysis