Hb_005588_150

Information

Type -
Description -
Location Contig5588: 140836-141656
Sequence    

Annotation

kegg
ID rcu:RCOM_0393610
description hypothetical protein
nr
ID XP_002531397.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93VR4
description MLP-like protein 423 OS=Arabidopsis thaliana GN=MLP423 PE=2 SV=1
trembl
ID B9SZH8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0393610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_013057_010 0.0704486072 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
3 Hb_004767_040 0.1144234769 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
4 Hb_009897_030 0.1180721579 - - -
5 Hb_000261_540 0.1190235799 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
6 Hb_039757_010 0.1236096946 - - -
7 Hb_001405_180 0.1248763703 - - zinc finger protein, putative [Ricinus communis]
8 Hb_007943_040 0.1285416828 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
9 Hb_000336_170 0.1295569815 - - Polcalcin Jun o, putative [Ricinus communis]
10 Hb_000635_170 0.1307988632 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000426_060 0.1353512798 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
12 Hb_002851_050 0.1397546458 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
13 Hb_005687_020 0.142464417 - - P66 protein [Hevea brasiliensis]
14 Hb_000994_090 0.1435268857 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
15 Hb_000426_070 0.1462185156 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
16 Hb_000045_110 0.1462522844 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
17 Hb_000592_040 0.1467189682 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008931_020 0.1492860448 - - Receptor like protein 46, putative [Theobroma cacao]
19 Hb_011980_020 0.1507388802 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_010368_040 0.1518883042 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005588_150 Hb_005588_150 Hb_013057_010 Hb_013057_010 Hb_005588_150--Hb_013057_010 Hb_004767_040 Hb_004767_040 Hb_005588_150--Hb_004767_040 Hb_009897_030 Hb_009897_030 Hb_005588_150--Hb_009897_030 Hb_000261_540 Hb_000261_540 Hb_005588_150--Hb_000261_540 Hb_039757_010 Hb_039757_010 Hb_005588_150--Hb_039757_010 Hb_001405_180 Hb_001405_180 Hb_005588_150--Hb_001405_180 Hb_013057_010--Hb_009897_030 Hb_007943_040 Hb_007943_040 Hb_013057_010--Hb_007943_040 Hb_013057_010--Hb_004767_040 Hb_000336_170 Hb_000336_170 Hb_013057_010--Hb_000336_170 Hb_013057_010--Hb_000261_540 Hb_004767_040--Hb_039757_010 Hb_004767_040--Hb_001405_180 Hb_004767_040--Hb_009897_030 Hb_093204_010 Hb_093204_010 Hb_004767_040--Hb_093204_010 Hb_000426_060 Hb_000426_060 Hb_004767_040--Hb_000426_060 Hb_002851_050 Hb_002851_050 Hb_004767_040--Hb_002851_050 Hb_009897_030--Hb_007943_040 Hb_009897_030--Hb_039757_010 Hb_009897_030--Hb_001405_180 Hb_009897_030--Hb_000426_060 Hb_011980_020 Hb_011980_020 Hb_009897_030--Hb_011980_020 Hb_000261_540--Hb_000336_170 Hb_000261_540--Hb_007943_040 Hb_000261_540--Hb_009897_030 Hb_008978_010 Hb_008978_010 Hb_000261_540--Hb_008978_010 Hb_163950_060 Hb_163950_060 Hb_000261_540--Hb_163950_060 Hb_000261_540--Hb_004767_040 Hb_039757_010--Hb_001405_180 Hb_039757_010--Hb_000426_060 Hb_039757_010--Hb_002851_050 Hb_000994_090 Hb_000994_090 Hb_039757_010--Hb_000994_090 Hb_000426_070 Hb_000426_070 Hb_039757_010--Hb_000426_070 Hb_001405_180--Hb_000426_060 Hb_001405_180--Hb_002851_050 Hb_001405_180--Hb_000994_090 Hb_001405_180--Hb_000426_070 Hb_000592_040 Hb_000592_040 Hb_001405_180--Hb_000592_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.311375 39.6373 0.0301238 2.92633 0.738026 0.0508037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0680627 0 0 0

CAGE analysis