Hb_005590_020

Information

Type -
Description -
Location Contig5590: 3899-7548
Sequence    

Annotation

kegg
ID cic:CICLE_v10010008mg
description hypothetical protein
nr
ID XP_006453045.1
description hypothetical protein CICLE_v10010008mg [Citrus clementina]
swissprot
ID Q9SMZ9
description Uncharacterized protein At4g33100 OS=Arabidopsis thaliana GN=At4g33100 PE=3 SV=1
trembl
ID A0A067G1T2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034254mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48664: 3945-7536 , PASA_asmbl_48665: 5691-5949
cDNA
(Sanger)
(ID:Location)		 014_D05.ab1: 3966-7396 , 028_E14.ab1: 3945-7451 , 045_P21.ab1: 3945-7452

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005590_020 0.0 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
2 Hb_010672_070 0.0484439809 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
3 Hb_076626_010 0.0513772489 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007944_040 0.0783082437 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
5 Hb_001268_140 0.0805486108 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002999_050 0.0807428625 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
7 Hb_000212_260 0.0817411104 - - acyl-carrier-protein [Triadica sebifera]
8 Hb_009851_100 0.0829833584 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
9 Hb_000028_400 0.0839091827 - - Protein SSU72, putative [Ricinus communis]
10 Hb_000134_330 0.0845460603 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
11 Hb_002835_320 0.0850179862 - - 60S ribosomal protein L27B [Hevea brasiliensis]
12 Hb_007575_070 0.0866375774 - - Histone H3.2 [Glycine soja]
13 Hb_003455_040 0.0873012089 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
14 Hb_000099_060 0.0879380623 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
15 Hb_001045_080 0.0901053925 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
16 Hb_017862_010 0.0902636664 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
17 Hb_000933_160 0.0913454899 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
18 Hb_000563_240 0.0918306464 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
19 Hb_001158_230 0.0920063425 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
20 Hb_001863_400 0.0922075849 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]

Gene co-expression network

sample Hb_005590_020 Hb_005590_020 Hb_010672_070 Hb_010672_070 Hb_005590_020--Hb_010672_070 Hb_076626_010 Hb_076626_010 Hb_005590_020--Hb_076626_010 Hb_007944_040 Hb_007944_040 Hb_005590_020--Hb_007944_040 Hb_001268_140 Hb_001268_140 Hb_005590_020--Hb_001268_140 Hb_002999_050 Hb_002999_050 Hb_005590_020--Hb_002999_050 Hb_000212_260 Hb_000212_260 Hb_005590_020--Hb_000212_260 Hb_010672_070--Hb_076626_010 Hb_010672_070--Hb_002999_050 Hb_003455_040 Hb_003455_040 Hb_010672_070--Hb_003455_040 Hb_003203_040 Hb_003203_040 Hb_010672_070--Hb_003203_040 Hb_000933_160 Hb_000933_160 Hb_010672_070--Hb_000933_160 Hb_076626_010--Hb_002999_050 Hb_076626_010--Hb_000933_160 Hb_001158_230 Hb_001158_230 Hb_076626_010--Hb_001158_230 Hb_003893_050 Hb_003893_050 Hb_076626_010--Hb_003893_050 Hb_000111_340 Hb_000111_340 Hb_007944_040--Hb_000111_340 Hb_007944_040--Hb_001268_140 Hb_007575_070 Hb_007575_070 Hb_007944_040--Hb_007575_070 Hb_002588_010 Hb_002588_010 Hb_007944_040--Hb_002588_010 Hb_001300_270 Hb_001300_270 Hb_007944_040--Hb_001300_270 Hb_011311_010 Hb_011311_010 Hb_007944_040--Hb_011311_010 Hb_001268_140--Hb_001300_270 Hb_000134_330 Hb_000134_330 Hb_001268_140--Hb_000134_330 Hb_001045_080 Hb_001045_080 Hb_001268_140--Hb_001045_080 Hb_155764_020 Hb_155764_020 Hb_001268_140--Hb_155764_020 Hb_001269_270 Hb_001269_270 Hb_001268_140--Hb_001269_270 Hb_003579_030 Hb_003579_030 Hb_002999_050--Hb_003579_030 Hb_001300_040 Hb_001300_040 Hb_002999_050--Hb_001300_040 Hb_002876_120 Hb_002876_120 Hb_002999_050--Hb_002876_120 Hb_003376_130 Hb_003376_130 Hb_000212_260--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000212_260--Hb_000069_100 Hb_001912_010 Hb_001912_010 Hb_000212_260--Hb_001912_010 Hb_000648_060 Hb_000648_060 Hb_000212_260--Hb_000648_060 Hb_010172_030 Hb_010172_030 Hb_000212_260--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000212_260--Hb_009851_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.6727 9.3358 17.1711 15.5874 36.0179 47.3662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.6142 166.016 70.2438 20.572 20.3559

CAGE analysis