Hb_005590_030

Information

Type -
Description -
Location Contig5590: 7756-10439
Sequence    

Annotation

kegg
ID tcc:TCM_037339
description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1
nr
ID XP_012077230.1
description PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
swissprot
ID Q5C9L6
description (S)-coclaurine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1
trembl
ID A0A067KCV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07632 PE=4 SV=1
Gene Ontology
ID GO:0008168
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48666: 8330-10250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005590_030 0.0 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
2 Hb_001178_020 0.1724084692 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
3 Hb_002851_060 0.1799242984 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
4 Hb_178345_010 0.1808142004 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
5 Hb_000641_030 0.184254561 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
6 Hb_001195_590 0.1892454062 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
7 Hb_005217_020 0.1946982986 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
8 Hb_009801_010 0.1964843294 - - ATPase inhibitor, putative [Ricinus communis]
9 Hb_002078_430 0.1969474392 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
10 Hb_000352_150 0.2005835112 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
11 Hb_003304_050 0.2015087487 - - PREDICTED: uncharacterized protein LOC105633679 isoform X1 [Jatropha curcas]
12 Hb_001956_120 0.2030081855 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004375_060 0.2059686821 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
14 Hb_002875_090 0.2063066001 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000376_150 0.2075800316 - - O-acyltransferase WSD1 [Gossypium arboreum]
16 Hb_003636_090 0.2085247737 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
17 Hb_003687_200 0.2104188104 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
18 Hb_001195_580 0.2119877915 - - hypothetical protein POPTR_0014s04130g [Populus trichocarpa]
19 Hb_044662_040 0.2128255155 - - -
20 Hb_002863_010 0.2133265863 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]

Gene co-expression network

sample Hb_005590_030 Hb_005590_030 Hb_001178_020 Hb_001178_020 Hb_005590_030--Hb_001178_020 Hb_002851_060 Hb_002851_060 Hb_005590_030--Hb_002851_060 Hb_178345_010 Hb_178345_010 Hb_005590_030--Hb_178345_010 Hb_000641_030 Hb_000641_030 Hb_005590_030--Hb_000641_030 Hb_001195_590 Hb_001195_590 Hb_005590_030--Hb_001195_590 Hb_005217_020 Hb_005217_020 Hb_005590_030--Hb_005217_020 Hb_002627_060 Hb_002627_060 Hb_001178_020--Hb_002627_060 Hb_001635_220 Hb_001635_220 Hb_001178_020--Hb_001635_220 Hb_170116_010 Hb_170116_010 Hb_001178_020--Hb_170116_010 Hb_000172_610 Hb_000172_610 Hb_001178_020--Hb_000172_610 Hb_004254_040 Hb_004254_040 Hb_001178_020--Hb_004254_040 Hb_001178_020--Hb_005217_020 Hb_044662_040 Hb_044662_040 Hb_002851_060--Hb_044662_040 Hb_011537_040 Hb_011537_040 Hb_002851_060--Hb_011537_040 Hb_004374_010 Hb_004374_010 Hb_002851_060--Hb_004374_010 Hb_017098_030 Hb_017098_030 Hb_002851_060--Hb_017098_030 Hb_005271_070 Hb_005271_070 Hb_002851_060--Hb_005271_070 Hb_002851_060--Hb_178345_010 Hb_178345_010--Hb_044662_040 Hb_000977_140 Hb_000977_140 Hb_178345_010--Hb_000977_140 Hb_012395_100 Hb_012395_100 Hb_178345_010--Hb_012395_100 Hb_000175_520 Hb_000175_520 Hb_178345_010--Hb_000175_520 Hb_004375_060 Hb_004375_060 Hb_178345_010--Hb_004375_060 Hb_003304_050 Hb_003304_050 Hb_000641_030--Hb_003304_050 Hb_000376_110 Hb_000376_110 Hb_000641_030--Hb_000376_110 Hb_000376_150 Hb_000376_150 Hb_000641_030--Hb_000376_150 Hb_003687_200 Hb_003687_200 Hb_000641_030--Hb_003687_200 Hb_000920_140 Hb_000920_140 Hb_000641_030--Hb_000920_140 Hb_000416_100 Hb_000416_100 Hb_000641_030--Hb_000416_100 Hb_001741_050 Hb_001741_050 Hb_001195_590--Hb_001741_050 Hb_000088_060 Hb_000088_060 Hb_001195_590--Hb_000088_060 Hb_001195_580 Hb_001195_580 Hb_001195_590--Hb_001195_580 Hb_006557_010 Hb_006557_010 Hb_001195_590--Hb_006557_010 Hb_089140_080 Hb_089140_080 Hb_001195_590--Hb_089140_080 Hb_000264_060 Hb_000264_060 Hb_005217_020--Hb_000264_060 Hb_002837_070 Hb_002837_070 Hb_005217_020--Hb_002837_070 Hb_000270_450 Hb_000270_450 Hb_005217_020--Hb_000270_450 Hb_001523_010 Hb_001523_010 Hb_005217_020--Hb_001523_010 Hb_000172_530 Hb_000172_530 Hb_005217_020--Hb_000172_530 Hb_009615_110 Hb_009615_110 Hb_005217_020--Hb_009615_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
149.785 0.34364 17.2921 14.9795 124.838 105.756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.6003 46.7269 2.66297 0.195723 6.26127

CAGE analysis