Hb_005595_030

Information

Type -
Description -
Location Contig5595: 56634-57216
Sequence    

Annotation

kegg
ID tcc:TCM_021586
description NAD(P)-linked oxidoreductase superfamily protein
nr
ID KCW88233.1
description hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
swissprot
ID P23901
description Aldose reductase OS=Hordeum vulgare PE=1 SV=1
trembl
ID A0A059DBU9
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00624 PE=4 SV=1
Gene Ontology
ID GO:0005737
description aldose reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48668: 56798-57180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005595_030 0.0 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
2 Hb_001355_050 0.0757495765 - - -
3 Hb_001880_020 0.0846260848 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
4 Hb_003927_020 0.0929043152 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
5 Hb_006992_030 0.1064621671 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
6 Hb_094002_010 0.127492805 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
7 Hb_000167_070 0.1280878483 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
8 Hb_043792_030 0.1443321132 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
9 Hb_001856_280 0.1457849811 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
10 Hb_150516_010 0.1527076007 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
11 Hb_000574_030 0.1625826185 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_000346_050 0.1675880296 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
13 Hb_020831_070 0.1701251413 - - hypothetical protein VITISV_027174 [Vitis vinifera]
14 Hb_019654_170 0.17219499 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
15 Hb_002016_130 0.1842308263 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
16 Hb_002188_050 0.1863068412 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
17 Hb_005021_040 0.186550649 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
18 Hb_023547_020 0.1914876277 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000906_120 0.1955615206 - - hypothetical protein VITISV_006406 [Vitis vinifera]
20 Hb_006415_010 0.196992434 - - -

Gene co-expression network

sample Hb_005595_030 Hb_005595_030 Hb_001355_050 Hb_001355_050 Hb_005595_030--Hb_001355_050 Hb_001880_020 Hb_001880_020 Hb_005595_030--Hb_001880_020 Hb_003927_020 Hb_003927_020 Hb_005595_030--Hb_003927_020 Hb_006992_030 Hb_006992_030 Hb_005595_030--Hb_006992_030 Hb_094002_010 Hb_094002_010 Hb_005595_030--Hb_094002_010 Hb_000167_070 Hb_000167_070 Hb_005595_030--Hb_000167_070 Hb_001355_050--Hb_003927_020 Hb_001355_050--Hb_006992_030 Hb_150516_010 Hb_150516_010 Hb_001355_050--Hb_150516_010 Hb_001355_050--Hb_001880_020 Hb_043792_030 Hb_043792_030 Hb_001355_050--Hb_043792_030 Hb_001880_020--Hb_000167_070 Hb_001880_020--Hb_003927_020 Hb_001856_280 Hb_001856_280 Hb_001880_020--Hb_001856_280 Hb_001880_020--Hb_043792_030 Hb_003927_020--Hb_000167_070 Hb_003927_020--Hb_006992_030 Hb_000346_050 Hb_000346_050 Hb_003927_020--Hb_000346_050 Hb_005765_020 Hb_005765_020 Hb_006992_030--Hb_005765_020 Hb_023547_020 Hb_023547_020 Hb_006992_030--Hb_023547_020 Hb_006992_030--Hb_001880_020 Hb_002090_010 Hb_002090_010 Hb_094002_010--Hb_002090_010 Hb_094002_010--Hb_001355_050 Hb_094002_010--Hb_001880_020 Hb_094002_010--Hb_003927_020 Hb_094002_010--Hb_150516_010 Hb_159404_010 Hb_159404_010 Hb_000167_070--Hb_159404_010 Hb_000167_070--Hb_001856_280 Hb_014967_010 Hb_014967_010 Hb_000167_070--Hb_014967_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0899012 0.132818 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.337129 0.828605

CAGE analysis