Hb_005599_060

Information

Type -
Description -
Location Contig5599: 52469-57588
Sequence    

Annotation

kegg
ID rcu:RCOM_1401140
description Syntaxin-72, putative
nr
ID XP_012064852.1
description PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
swissprot
ID Q94KK6
description Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1
trembl
ID B9SK57
description Syntaxin-72, putative OS=Ricinus communis GN=RCOM_1401140 PE=4 SV=1
Gene Ontology
ID GO:0005622
description syntaxin of plants 71 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48669: 52373-53029 , PASA_asmbl_48670: 55912-57556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005599_060 0.0 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
2 Hb_002078_170 0.2092880504 - - ELMO/CED-12 domain-containing protein isoform 3 [Theobroma cacao]
3 Hb_001310_090 0.2232864369 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
4 Hb_183672_010 0.2497426498 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
5 Hb_000190_240 0.3001262687 - - unnamed protein product [Coffea canephora]
6 Hb_000032_450 0.3032973212 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
7 Hb_001287_010 0.3039566572 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
8 Hb_152362_010 0.305455253 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
9 Hb_006911_050 0.3055319815 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
10 Hb_007943_060 0.3137651535 - - Rop5 [Hevea brasiliensis]
11 Hb_000450_150 0.3146658507 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
12 Hb_001943_020 0.3170061773 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
13 Hb_001550_050 0.3300624805 - - PREDICTED: J domain-containing protein spf31 [Eucalyptus grandis]
14 Hb_000820_050 0.3306103071 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
15 Hb_000820_060 0.3322409363 - - -
16 Hb_000440_030 0.3322519242 - - 50 kDa protein [Hevea brasiliensis]
17 Hb_009707_030 0.3367582639 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
18 Hb_025311_020 0.340061744 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
19 Hb_003813_180 0.3411541709 - - sterol desaturase, putative [Ricinus communis]
20 Hb_105328_010 0.3430821965 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_005599_060 Hb_005599_060 Hb_002078_170 Hb_002078_170 Hb_005599_060--Hb_002078_170 Hb_001310_090 Hb_001310_090 Hb_005599_060--Hb_001310_090 Hb_183672_010 Hb_183672_010 Hb_005599_060--Hb_183672_010 Hb_000190_240 Hb_000190_240 Hb_005599_060--Hb_000190_240 Hb_000032_450 Hb_000032_450 Hb_005599_060--Hb_000032_450 Hb_001287_010 Hb_001287_010 Hb_005599_060--Hb_001287_010 Hb_002078_170--Hb_001287_010 Hb_002150_060 Hb_002150_060 Hb_002078_170--Hb_002150_060 Hb_006153_080 Hb_006153_080 Hb_002078_170--Hb_006153_080 Hb_002078_170--Hb_001310_090 Hb_001486_010 Hb_001486_010 Hb_002078_170--Hb_001486_010 Hb_009707_030 Hb_009707_030 Hb_001310_090--Hb_009707_030 Hb_002045_080 Hb_002045_080 Hb_001310_090--Hb_002045_080 Hb_002173_050 Hb_002173_050 Hb_001310_090--Hb_002173_050 Hb_003197_010 Hb_003197_010 Hb_001310_090--Hb_003197_010 Hb_183672_010--Hb_000190_240 Hb_001943_020 Hb_001943_020 Hb_183672_010--Hb_001943_020 Hb_001235_080 Hb_001235_080 Hb_183672_010--Hb_001235_080 Hb_000440_030 Hb_000440_030 Hb_183672_010--Hb_000440_030 Hb_183672_010--Hb_002078_170 Hb_025311_020 Hb_025311_020 Hb_000190_240--Hb_025311_020 Hb_000190_240--Hb_001943_020 Hb_000190_240--Hb_000440_030 Hb_006280_010 Hb_006280_010 Hb_000190_240--Hb_006280_010 Hb_105328_010 Hb_105328_010 Hb_000032_450--Hb_105328_010 Hb_000115_010 Hb_000115_010 Hb_000032_450--Hb_000115_010 Hb_003878_050 Hb_003878_050 Hb_000032_450--Hb_003878_050 Hb_000703_280 Hb_000703_280 Hb_000032_450--Hb_000703_280 Hb_007534_060 Hb_007534_060 Hb_000032_450--Hb_007534_060 Hb_026889_040 Hb_026889_040 Hb_000032_450--Hb_026889_040 Hb_007943_060 Hb_007943_060 Hb_001287_010--Hb_007943_060 Hb_001287_010--Hb_009707_030 Hb_001545_070 Hb_001545_070 Hb_001287_010--Hb_001545_070 Hb_001287_010--Hb_002150_060 Hb_000538_180 Hb_000538_180 Hb_001287_010--Hb_000538_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0828091 0.0587138 0.349561 0.761106 0.0816943 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0372599 1.65166 0.0897894 0.153024

CAGE analysis