Hb_005601_020

Information

Type -
Description -
Location Contig5601: 43015-51742
Sequence    

Annotation

kegg
ID rcu:RCOM_1563370
description ankyrin repeat domain protein, putative
nr
ID XP_012077421.1
description PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
swissprot
ID Q9SAR5
description Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2
trembl
ID A0A067LI29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10785 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48754: 43085-51706 , PASA_asmbl_48756: 49000-49320 , PASA_asmbl_48758: 50449-50572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005601_020 0.0 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
2 Hb_000181_100 0.0714906111 - - PREDICTED: protein starmaker [Jatropha curcas]
3 Hb_000254_100 0.083195445 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
4 Hb_031091_020 0.0883170596 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
5 Hb_004109_120 0.0884484641 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
6 Hb_001014_100 0.090860756 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
7 Hb_000207_300 0.0922454534 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
8 Hb_000320_470 0.0944364468 - - calcium-dependent protein kinase [Hevea brasiliensis]
9 Hb_004800_180 0.0954948514 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
10 Hb_004324_360 0.0957565633 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
11 Hb_005260_030 0.0965690765 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
12 Hb_001824_080 0.0970990804 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
13 Hb_007765_100 0.0971803943 - - PREDICTED: helicase SKI2W [Jatropha curcas]
14 Hb_002150_140 0.0977572461 - - PREDICTED: girdin-like [Jatropha curcas]
15 Hb_000665_120 0.0978520639 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
16 Hb_026053_040 0.0983158633 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002684_020 0.0990089077 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
18 Hb_002055_020 0.0990886416 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
19 Hb_002675_250 0.0994422133 - - aspartate aminotransferase, putative [Ricinus communis]
20 Hb_001488_020 0.0999606895 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_005601_020 Hb_005601_020 Hb_000181_100 Hb_000181_100 Hb_005601_020--Hb_000181_100 Hb_000254_100 Hb_000254_100 Hb_005601_020--Hb_000254_100 Hb_031091_020 Hb_031091_020 Hb_005601_020--Hb_031091_020 Hb_004109_120 Hb_004109_120 Hb_005601_020--Hb_004109_120 Hb_001014_100 Hb_001014_100 Hb_005601_020--Hb_001014_100 Hb_000207_300 Hb_000207_300 Hb_005601_020--Hb_000207_300 Hb_000320_470 Hb_000320_470 Hb_000181_100--Hb_000320_470 Hb_004800_180 Hb_004800_180 Hb_000181_100--Hb_004800_180 Hb_001008_070 Hb_001008_070 Hb_000181_100--Hb_001008_070 Hb_026053_040 Hb_026053_040 Hb_000181_100--Hb_026053_040 Hb_000181_100--Hb_031091_020 Hb_000847_080 Hb_000847_080 Hb_000254_100--Hb_000847_080 Hb_000254_100--Hb_004109_120 Hb_030414_040 Hb_030414_040 Hb_000254_100--Hb_030414_040 Hb_000567_070 Hb_000567_070 Hb_000254_100--Hb_000567_070 Hb_003186_020 Hb_003186_020 Hb_000254_100--Hb_003186_020 Hb_001824_080 Hb_001824_080 Hb_000254_100--Hb_001824_080 Hb_002027_080 Hb_002027_080 Hb_031091_020--Hb_002027_080 Hb_031091_020--Hb_000320_470 Hb_001518_080 Hb_001518_080 Hb_031091_020--Hb_001518_080 Hb_031091_020--Hb_003186_020 Hb_000635_090 Hb_000635_090 Hb_031091_020--Hb_000635_090 Hb_004109_120--Hb_000207_300 Hb_004109_120--Hb_001824_080 Hb_000724_020 Hb_000724_020 Hb_004109_120--Hb_000724_020 Hb_001158_160 Hb_001158_160 Hb_004109_120--Hb_001158_160 Hb_004339_040 Hb_004339_040 Hb_004109_120--Hb_004339_040 Hb_000445_140 Hb_000445_140 Hb_001014_100--Hb_000445_140 Hb_005496_050 Hb_005496_050 Hb_001014_100--Hb_005496_050 Hb_000261_050 Hb_000261_050 Hb_001014_100--Hb_000261_050 Hb_001619_050 Hb_001619_050 Hb_001014_100--Hb_001619_050 Hb_132840_110 Hb_132840_110 Hb_001014_100--Hb_132840_110 Hb_002811_270 Hb_002811_270 Hb_001014_100--Hb_002811_270 Hb_003728_100 Hb_003728_100 Hb_000207_300--Hb_003728_100 Hb_009225_020 Hb_009225_020 Hb_000207_300--Hb_009225_020 Hb_000304_070 Hb_000304_070 Hb_000207_300--Hb_000304_070 Hb_000212_440 Hb_000212_440 Hb_000207_300--Hb_000212_440 Hb_000207_300--Hb_001824_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.4956 46.2232 98.0237 50.9377 41.8774 39.3005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.9488 30.1647 44.119 63.8408 108.308

CAGE analysis