Hb_005601_050

Information

Type -
Description -
Location Contig5601: 67776-68297
Sequence    

Annotation

kegg
ID mdm:103444007
description uncharacterized LOC103444007
nr
ID XP_008381139.1
description PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
swissprot
ID -
description -
trembl
ID V4UQQ7
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010288mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10003434mg, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005601_050 0.0 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
2 Hb_115045_010 0.17515727 - - ATP binding protein, putative [Ricinus communis]
3 Hb_101705_020 0.2614384368 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005016_070 0.2758502988 - - -
5 Hb_037497_010 0.313514355 - - PREDICTED: choline transporter-like protein 2 isoform X1 [Populus euphratica]
6 Hb_005741_010 0.314126512 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
7 Hb_004458_050 0.3141782205 - - -
8 Hb_012194_010 0.3143017227 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
9 Hb_011360_100 0.3147053199 - - -
10 Hb_006275_030 0.3157093725 - - -
11 Hb_000574_020 0.3160131886 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_059069_010 0.3160644281 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
13 Hb_038675_010 0.3161838169 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
14 Hb_002463_080 0.3169002134 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_003556_020 0.3173202755 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
16 Hb_000195_050 0.3224972203 - - -
17 Hb_010222_010 0.3267479114 - - -
18 Hb_000188_090 0.3276154443 - - JHL22C18.10 [Jatropha curcas]
19 Hb_000934_220 0.3291959567 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
20 Hb_000563_290 0.3313479088 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]

Gene co-expression network

sample Hb_005601_050 Hb_005601_050 Hb_115045_010 Hb_115045_010 Hb_005601_050--Hb_115045_010 Hb_101705_020 Hb_101705_020 Hb_005601_050--Hb_101705_020 Hb_005016_070 Hb_005016_070 Hb_005601_050--Hb_005016_070 Hb_037497_010 Hb_037497_010 Hb_005601_050--Hb_037497_010 Hb_005741_010 Hb_005741_010 Hb_005601_050--Hb_005741_010 Hb_004458_050 Hb_004458_050 Hb_005601_050--Hb_004458_050 Hb_115045_010--Hb_005016_070 Hb_001032_030 Hb_001032_030 Hb_115045_010--Hb_001032_030 Hb_000589_230 Hb_000589_230 Hb_115045_010--Hb_000589_230 Hb_081815_010 Hb_081815_010 Hb_115045_010--Hb_081815_010 Hb_001418_060 Hb_001418_060 Hb_115045_010--Hb_001418_060 Hb_123560_030 Hb_123560_030 Hb_101705_020--Hb_123560_030 Hb_001001_050 Hb_001001_050 Hb_101705_020--Hb_001001_050 Hb_119960_010 Hb_119960_010 Hb_101705_020--Hb_119960_010 Hb_006620_080 Hb_006620_080 Hb_101705_020--Hb_006620_080 Hb_011364_030 Hb_011364_030 Hb_101705_020--Hb_011364_030 Hb_001385_090 Hb_001385_090 Hb_005016_070--Hb_001385_090 Hb_001762_070 Hb_001762_070 Hb_005016_070--Hb_001762_070 Hb_003927_150 Hb_003927_150 Hb_005016_070--Hb_003927_150 Hb_005016_070--Hb_001418_060 Hb_059952_010 Hb_059952_010 Hb_005016_070--Hb_059952_010 Hb_079212_010 Hb_079212_010 Hb_037497_010--Hb_079212_010 Hb_047091_010 Hb_047091_010 Hb_037497_010--Hb_047091_010 Hb_001235_060 Hb_001235_060 Hb_037497_010--Hb_001235_060 Hb_031866_050 Hb_031866_050 Hb_037497_010--Hb_031866_050 Hb_088065_010 Hb_088065_010 Hb_037497_010--Hb_088065_010 Hb_001231_070 Hb_001231_070 Hb_037497_010--Hb_001231_070 Hb_005741_010--Hb_004458_050 Hb_012194_010 Hb_012194_010 Hb_005741_010--Hb_012194_010 Hb_011360_100 Hb_011360_100 Hb_005741_010--Hb_011360_100 Hb_006275_030 Hb_006275_030 Hb_005741_010--Hb_006275_030 Hb_059069_010 Hb_059069_010 Hb_005741_010--Hb_059069_010 Hb_038675_010 Hb_038675_010 Hb_005741_010--Hb_038675_010 Hb_004458_050--Hb_011360_100 Hb_004458_050--Hb_012194_010 Hb_004458_050--Hb_059069_010 Hb_004458_050--Hb_038675_010 Hb_004458_050--Hb_006275_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107155 0 0 0.0663654 0 0.187372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis