Hb_005608_010

Information

Type -
Description -
Location Contig5608: 28657-30198
Sequence    

Annotation

kegg
ID rcu:RCOM_0852480
description Spotted leaf protein, putative
nr
ID XP_012082241.1
description PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
swissprot
ID Q9FL17
description U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40 PE=2 SV=2
trembl
ID A0A067LL08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09659 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005608_010 0.0 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
2 Hb_000260_370 0.2074838319 - - protein phosphatase-1, putative [Ricinus communis]
3 Hb_007192_060 0.2140075604 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000062_030 0.2276319259 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
5 Hb_007044_010 0.2291825133 - - -
6 Hb_008616_030 0.2305440894 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
7 Hb_031527_070 0.2457878485 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
8 Hb_002999_060 0.2466910733 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
9 Hb_001504_090 0.2476668884 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
10 Hb_004330_030 0.2501961907 - - -
11 Hb_003096_040 0.2514821539 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
12 Hb_045370_010 0.2593430596 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000201_040 0.2593744879 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
14 Hb_003914_030 0.2606188562 - - -
15 Hb_004296_010 0.2610553454 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
16 Hb_008556_020 0.2616847212 - - -
17 Hb_186857_010 0.2627974593 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_002039_050 0.2637748189 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
19 Hb_001944_030 0.2649552244 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
20 Hb_000505_110 0.2651630784 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]

Gene co-expression network

sample Hb_005608_010 Hb_005608_010 Hb_000260_370 Hb_000260_370 Hb_005608_010--Hb_000260_370 Hb_007192_060 Hb_007192_060 Hb_005608_010--Hb_007192_060 Hb_000062_030 Hb_000062_030 Hb_005608_010--Hb_000062_030 Hb_007044_010 Hb_007044_010 Hb_005608_010--Hb_007044_010 Hb_008616_030 Hb_008616_030 Hb_005608_010--Hb_008616_030 Hb_031527_070 Hb_031527_070 Hb_005608_010--Hb_031527_070 Hb_002965_030 Hb_002965_030 Hb_000260_370--Hb_002965_030 Hb_004296_010 Hb_004296_010 Hb_000260_370--Hb_004296_010 Hb_002999_060 Hb_002999_060 Hb_000260_370--Hb_002999_060 Hb_000422_110 Hb_000422_110 Hb_000260_370--Hb_000422_110 Hb_006618_040 Hb_006618_040 Hb_000260_370--Hb_006618_040 Hb_013394_060 Hb_013394_060 Hb_000260_370--Hb_013394_060 Hb_000258_290 Hb_000258_290 Hb_007192_060--Hb_000258_290 Hb_120662_010 Hb_120662_010 Hb_007192_060--Hb_120662_010 Hb_000030_240 Hb_000030_240 Hb_007192_060--Hb_000030_240 Hb_050686_010 Hb_050686_010 Hb_007192_060--Hb_050686_010 Hb_000366_190 Hb_000366_190 Hb_007192_060--Hb_000366_190 Hb_000505_110 Hb_000505_110 Hb_000062_030--Hb_000505_110 Hb_000062_030--Hb_000366_190 Hb_008147_050 Hb_008147_050 Hb_000062_030--Hb_008147_050 Hb_001031_040 Hb_001031_040 Hb_000062_030--Hb_001031_040 Hb_013818_030 Hb_013818_030 Hb_000062_030--Hb_013818_030 Hb_186857_010 Hb_186857_010 Hb_000062_030--Hb_186857_010 Hb_011639_010 Hb_011639_010 Hb_007044_010--Hb_011639_010 Hb_007044_010--Hb_008616_030 Hb_002311_230 Hb_002311_230 Hb_007044_010--Hb_002311_230 Hb_004631_160 Hb_004631_160 Hb_007044_010--Hb_004631_160 Hb_001522_010 Hb_001522_010 Hb_007044_010--Hb_001522_010 Hb_031073_010 Hb_031073_010 Hb_007044_010--Hb_031073_010 Hb_008616_030--Hb_011639_010 Hb_008616_030--Hb_004631_160 Hb_012395_080 Hb_012395_080 Hb_008616_030--Hb_012395_080 Hb_007223_010 Hb_007223_010 Hb_008616_030--Hb_007223_010 Hb_119886_040 Hb_119886_040 Hb_008616_030--Hb_119886_040 Hb_005333_030 Hb_005333_030 Hb_031527_070--Hb_005333_030 Hb_003025_050 Hb_003025_050 Hb_031527_070--Hb_003025_050 Hb_003096_040 Hb_003096_040 Hb_031527_070--Hb_003096_040 Hb_002890_100 Hb_002890_100 Hb_031527_070--Hb_002890_100 Hb_009028_030 Hb_009028_030 Hb_031527_070--Hb_009028_030 Hb_004195_060 Hb_004195_060 Hb_031527_070--Hb_004195_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.90079 6.41555 1.27162 3.80904 13.9398 2.04898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.121015 0.0238018 0 1.57653 1.29613

CAGE analysis