Hb_005608_020

Information

Type -
Description -
Location Contig5608: 33355-40159
Sequence    

Annotation

kegg
ID rcu:RCOM_0852470
description Peroxidase 31 precursor, putative (EC:1.11.1.7)
nr
ID XP_012082207.1
description PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q9ZPV5
description Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=3 SV=2
trembl
ID A0A067LLX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09658 PE=4 SV=1
Gene Ontology
ID GO:0004601
description nucleolar complex protein 2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48764: 33530-34379 , PASA_asmbl_48765: 35605-37543 , PASA_asmbl_48766: 37565-39197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005608_020 0.0 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
2 Hb_006157_020 0.0956762388 - - PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
3 Hb_002205_040 0.1001960115 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_022693_120 0.1042565012 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
5 Hb_000084_120 0.10685027 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
6 Hb_000029_130 0.1069499806 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
7 Hb_002890_020 0.1071531674 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
8 Hb_002271_030 0.1081036197 - - Vacuolar protein sorting protein, putative [Ricinus communis]
9 Hb_000120_920 0.1092007538 - - poly(A) polymerase, putative [Ricinus communis]
10 Hb_012490_030 0.1094466592 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
11 Hb_004412_010 0.1102909083 - - -
12 Hb_004096_100 0.1112334147 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
13 Hb_000271_090 0.1113880913 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_004954_070 0.1115117436 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
15 Hb_001190_070 0.1132548667 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
16 Hb_023386_040 0.1141571827 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
17 Hb_001789_240 0.1143866246 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
18 Hb_000703_220 0.1152938534 - - PREDICTED: 50S ribosomal protein L1, chloroplastic [Jatropha curcas]
19 Hb_007632_240 0.115495008 - - transporter, putative [Ricinus communis]
20 Hb_007805_010 0.1168800857 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_005608_020 Hb_005608_020 Hb_006157_020 Hb_006157_020 Hb_005608_020--Hb_006157_020 Hb_002205_040 Hb_002205_040 Hb_005608_020--Hb_002205_040 Hb_022693_120 Hb_022693_120 Hb_005608_020--Hb_022693_120 Hb_000084_120 Hb_000084_120 Hb_005608_020--Hb_000084_120 Hb_000029_130 Hb_000029_130 Hb_005608_020--Hb_000029_130 Hb_002890_020 Hb_002890_020 Hb_005608_020--Hb_002890_020 Hb_000271_090 Hb_000271_090 Hb_006157_020--Hb_000271_090 Hb_004429_100 Hb_004429_100 Hb_006157_020--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_006157_020--Hb_033834_060 Hb_004689_050 Hb_004689_050 Hb_006157_020--Hb_004689_050 Hb_031284_040 Hb_031284_040 Hb_006157_020--Hb_031284_040 Hb_012799_130 Hb_012799_130 Hb_006157_020--Hb_012799_130 Hb_023386_040 Hb_023386_040 Hb_002205_040--Hb_023386_040 Hb_002205_040--Hb_002890_020 Hb_001014_050 Hb_001014_050 Hb_002205_040--Hb_001014_050 Hb_000926_190 Hb_000926_190 Hb_002205_040--Hb_000926_190 Hb_000207_310 Hb_000207_310 Hb_002205_040--Hb_000207_310 Hb_002205_040--Hb_022693_120 Hb_022693_120--Hb_000207_310 Hb_022693_120--Hb_023386_040 Hb_000768_110 Hb_000768_110 Hb_022693_120--Hb_000768_110 Hb_007026_030 Hb_007026_030 Hb_022693_120--Hb_007026_030 Hb_009222_010 Hb_009222_010 Hb_022693_120--Hb_009222_010 Hb_016898_010 Hb_016898_010 Hb_000084_120--Hb_016898_010 Hb_003362_070 Hb_003362_070 Hb_000084_120--Hb_003362_070 Hb_003952_150 Hb_003952_150 Hb_000084_120--Hb_003952_150 Hb_004602_040 Hb_004602_040 Hb_000084_120--Hb_004602_040 Hb_000101_240 Hb_000101_240 Hb_000084_120--Hb_000101_240 Hb_003428_070 Hb_003428_070 Hb_000084_120--Hb_003428_070 Hb_010381_060 Hb_010381_060 Hb_000029_130--Hb_010381_060 Hb_000029_130--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_000029_130--Hb_000913_050 Hb_003464_020 Hb_003464_020 Hb_000029_130--Hb_003464_020 Hb_000029_130--Hb_002890_020 Hb_009627_010 Hb_009627_010 Hb_000029_130--Hb_009627_010 Hb_002890_020--Hb_000207_310 Hb_000345_170 Hb_000345_170 Hb_002890_020--Hb_000345_170 Hb_002890_020--Hb_016898_010 Hb_002890_020--Hb_003952_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.50482 3.01426 3.22509 2.16311 7.59919 11.4438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.95793 6.5431 3.69905 8.36344 4.53123

CAGE analysis