Hb_005611_010

Information

Type -
Description -
Location Contig5611: 4040-22154
Sequence    

Annotation

kegg
ID rcu:RCOM_1557920
description hypothetical protein
nr
ID XP_012075568.1
description PREDICTED: protein prune homolog [Jatropha curcas]
swissprot
ID Q5E9Y6
description Protein prune homolog OS=Bos taurus GN=PRUNE PE=2 SV=1
trembl
ID B9SLV6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1557920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48796: 4951-10244 , PASA_asmbl_48797: 15044-22250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005611_010 0.0 - - PREDICTED: protein prune homolog [Jatropha curcas]
2 Hb_004297_100 0.0735601683 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
3 Hb_007166_050 0.0794246585 - - -
4 Hb_001019_090 0.0858098598 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
5 Hb_000200_210 0.0861910454 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000483_160 0.08789446 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
7 Hb_022250_040 0.0918007731 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
8 Hb_002893_060 0.0921491358 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
9 Hb_001279_070 0.0922475834 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
10 Hb_007741_050 0.0923821314 - - vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_070986_010 0.0937217611 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
12 Hb_000260_050 0.0950707816 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
13 Hb_024835_030 0.0956534164 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
14 Hb_009711_030 0.0958231298 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
15 Hb_023732_070 0.0958609862 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
16 Hb_000316_110 0.0958626149 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
17 Hb_000417_110 0.0959599311 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
18 Hb_000617_320 0.0970776852 - - 40S ribosomal protein S21B [Hevea brasiliensis]
19 Hb_001584_070 0.0981093131 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002477_240 0.0984735825 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]

Gene co-expression network

sample Hb_005611_010 Hb_005611_010 Hb_004297_100 Hb_004297_100 Hb_005611_010--Hb_004297_100 Hb_007166_050 Hb_007166_050 Hb_005611_010--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_005611_010--Hb_001019_090 Hb_000200_210 Hb_000200_210 Hb_005611_010--Hb_000200_210 Hb_000483_160 Hb_000483_160 Hb_005611_010--Hb_000483_160 Hb_022250_040 Hb_022250_040 Hb_005611_010--Hb_022250_040 Hb_004297_100--Hb_000483_160 Hb_004297_100--Hb_001019_090 Hb_004297_100--Hb_000200_210 Hb_000617_320 Hb_000617_320 Hb_004297_100--Hb_000617_320 Hb_023732_070 Hb_023732_070 Hb_004297_100--Hb_023732_070 Hb_003086_110 Hb_003086_110 Hb_007166_050--Hb_003086_110 Hb_007166_050--Hb_000617_320 Hb_007166_050--Hb_001019_090 Hb_118977_020 Hb_118977_020 Hb_007166_050--Hb_118977_020 Hb_001437_040 Hb_001437_040 Hb_007166_050--Hb_001437_040 Hb_000316_110 Hb_000316_110 Hb_007166_050--Hb_000316_110 Hb_001019_090--Hb_000617_320 Hb_000152_430 Hb_000152_430 Hb_001019_090--Hb_000152_430 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_001019_090--Hb_000483_160 Hb_000500_130 Hb_000500_130 Hb_000200_210--Hb_000500_130 Hb_006447_010 Hb_006447_010 Hb_000200_210--Hb_006447_010 Hb_000200_210--Hb_001019_090 Hb_125000_010 Hb_125000_010 Hb_000200_210--Hb_125000_010 Hb_003874_020 Hb_003874_020 Hb_000200_210--Hb_003874_020 Hb_000260_050 Hb_000260_050 Hb_000483_160--Hb_000260_050 Hb_000417_110 Hb_000417_110 Hb_000483_160--Hb_000417_110 Hb_002477_240 Hb_002477_240 Hb_000483_160--Hb_002477_240 Hb_004899_220 Hb_004899_220 Hb_000483_160--Hb_004899_220 Hb_009711_030 Hb_009711_030 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_004662_030 Hb_004662_030 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_022250_040--Hb_125000_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60311 0.249894 0.40633 0.465617 1.02641 1.45561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64103 2.12785 0.899188 0.486552 0.0500667

CAGE analysis