Hb_005614_050

Information

Type -
Description -
Location Contig5614: 56046-59949
Sequence    

Annotation

kegg
ID rcu:RCOM_1232370
description aspartate aminotransferase, putative (EC:2.6.1.1)
nr
ID XP_012089708.1
description PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
swissprot
ID P46643
description Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=ASP1 PE=1 SV=1
trembl
ID A0A067JJ16
description Aspartate aminotransferase OS=Jatropha curcas GN=JCGZ_00375 PE=3 SV=1
Gene Ontology
ID GO:0004069
description aspartate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48802: 56221-56406 , PASA_asmbl_48803: 57224-58209 , PASA_asmbl_48804: 57289-57673 , PASA_asmbl_48805: 58387-59143 , PASA_asmbl_48806: 59457-59910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005614_050 0.0 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
2 Hb_007161_010 0.0796909346 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
3 Hb_002756_020 0.1057258955 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
4 Hb_003551_050 0.1095546185 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
5 Hb_000363_200 0.1108523812 - - 40S ribosomal protein S8, putative [Ricinus communis]
6 Hb_001538_140 0.1165931484 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
7 Hb_006594_020 0.1187546219 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
8 Hb_000562_040 0.1201509286 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
9 Hb_002078_460 0.1264016589 - - -
10 Hb_002290_040 0.1273112904 - - conserved hypothetical protein [Ricinus communis]
11 Hb_093458_050 0.1285944648 - - glutathione reductase [Hevea brasiliensis]
12 Hb_007181_070 0.1288090079 - - PREDICTED: alpha-galactosidase-like [Jatropha curcas]
13 Hb_007943_090 0.1293369116 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
14 Hb_003938_180 0.1307402854 - - lesion inducing family protein [Populus trichocarpa]
15 Hb_088202_010 0.1308096097 - - hypothetical protein JCGZ_13241 [Jatropha curcas]
16 Hb_000753_130 0.1317245941 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
17 Hb_007382_150 0.1321478657 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
18 Hb_003581_260 0.132541007 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
19 Hb_003147_050 0.1341757094 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000327_220 0.138493574 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]

Gene co-expression network

sample Hb_005614_050 Hb_005614_050 Hb_007161_010 Hb_007161_010 Hb_005614_050--Hb_007161_010 Hb_002756_020 Hb_002756_020 Hb_005614_050--Hb_002756_020 Hb_003551_050 Hb_003551_050 Hb_005614_050--Hb_003551_050 Hb_000363_200 Hb_000363_200 Hb_005614_050--Hb_000363_200 Hb_001538_140 Hb_001538_140 Hb_005614_050--Hb_001538_140 Hb_006594_020 Hb_006594_020 Hb_005614_050--Hb_006594_020 Hb_007161_010--Hb_000363_200 Hb_000179_050 Hb_000179_050 Hb_007161_010--Hb_000179_050 Hb_002078_460 Hb_002078_460 Hb_007161_010--Hb_002078_460 Hb_007161_010--Hb_003551_050 Hb_000753_130 Hb_000753_130 Hb_007161_010--Hb_000753_130 Hb_004429_070 Hb_004429_070 Hb_002756_020--Hb_004429_070 Hb_002290_040 Hb_002290_040 Hb_002756_020--Hb_002290_040 Hb_000327_220 Hb_000327_220 Hb_002756_020--Hb_000327_220 Hb_006816_450 Hb_006816_450 Hb_002756_020--Hb_006816_450 Hb_002756_020--Hb_003551_050 Hb_093458_050 Hb_093458_050 Hb_003551_050--Hb_093458_050 Hb_011953_020 Hb_011953_020 Hb_003551_050--Hb_011953_020 Hb_000976_360 Hb_000976_360 Hb_003551_050--Hb_000976_360 Hb_031862_110 Hb_031862_110 Hb_003551_050--Hb_031862_110 Hb_002603_160 Hb_002603_160 Hb_003551_050--Hb_002603_160 Hb_003551_050--Hb_000753_130 Hb_003226_280 Hb_003226_280 Hb_000363_200--Hb_003226_280 Hb_000865_070 Hb_000865_070 Hb_000363_200--Hb_000865_070 Hb_003097_210 Hb_003097_210 Hb_000363_200--Hb_003097_210 Hb_001545_060 Hb_001545_060 Hb_000363_200--Hb_001545_060 Hb_000363_200--Hb_002078_460 Hb_116898_010 Hb_116898_010 Hb_000363_200--Hb_116898_010 Hb_003147_050 Hb_003147_050 Hb_001538_140--Hb_003147_050 Hb_000432_050 Hb_000432_050 Hb_001538_140--Hb_000432_050 Hb_001538_140--Hb_002290_040 Hb_001538_140--Hb_000363_200 Hb_001538_140--Hb_002078_460 Hb_006594_020--Hb_007161_010 Hb_001232_130 Hb_001232_130 Hb_006594_020--Hb_001232_130 Hb_017434_050 Hb_017434_050 Hb_006594_020--Hb_017434_050 Hb_000380_020 Hb_000380_020 Hb_006594_020--Hb_000380_020 Hb_019654_090 Hb_019654_090 Hb_006594_020--Hb_019654_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25549 1.32972 1.28945 2.27859 5.03951 3.95346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.66015 13.4039 19.0574 6.05574 0.748586

CAGE analysis