Hb_005615_080

Information

Type -
Description -
Location Contig5615: 93710-94090
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa026250mg
description hypothetical protein
nr
ID XP_012091696.1
description PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JB46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21502 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005615_080 0.0 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
2 Hb_010423_040 0.0859082301 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
3 Hb_002260_150 0.0898903242 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
4 Hb_002296_040 0.0938958276 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
5 Hb_001009_300 0.094414615 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
6 Hb_021238_050 0.1018938792 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000003_730 0.1053702556 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
8 Hb_000030_220 0.108855533 - - PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]
9 Hb_004128_190 0.1095901224 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
10 Hb_003333_060 0.1103373978 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
11 Hb_012305_050 0.112162487 - - unnamed protein product [Coffea canephora]
12 Hb_000103_090 0.1143468525 - - PREDICTED: protein RDM1 [Jatropha curcas]
13 Hb_007735_030 0.1171526288 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
14 Hb_002596_040 0.119820904 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
15 Hb_008406_190 0.1198248056 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
16 Hb_004032_100 0.1206093919 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
17 Hb_000103_080 0.1207959431 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
18 Hb_005400_030 0.1209573203 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
19 Hb_000326_090 0.1219861786 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
20 Hb_003011_040 0.1221894824 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]

Gene co-expression network

sample Hb_005615_080 Hb_005615_080 Hb_010423_040 Hb_010423_040 Hb_005615_080--Hb_010423_040 Hb_002260_150 Hb_002260_150 Hb_005615_080--Hb_002260_150 Hb_002296_040 Hb_002296_040 Hb_005615_080--Hb_002296_040 Hb_001009_300 Hb_001009_300 Hb_005615_080--Hb_001009_300 Hb_021238_050 Hb_021238_050 Hb_005615_080--Hb_021238_050 Hb_000003_730 Hb_000003_730 Hb_005615_080--Hb_000003_730 Hb_008406_190 Hb_008406_190 Hb_010423_040--Hb_008406_190 Hb_003333_060 Hb_003333_060 Hb_010423_040--Hb_003333_060 Hb_010423_040--Hb_002296_040 Hb_000103_090 Hb_000103_090 Hb_010423_040--Hb_000103_090 Hb_000103_080 Hb_000103_080 Hb_010423_040--Hb_000103_080 Hb_002260_150--Hb_002296_040 Hb_002596_040 Hb_002596_040 Hb_002260_150--Hb_002596_040 Hb_002260_150--Hb_010423_040 Hb_000326_090 Hb_000326_090 Hb_002260_150--Hb_000326_090 Hb_003633_030 Hb_003633_030 Hb_002260_150--Hb_003633_030 Hb_002296_040--Hb_002596_040 Hb_002662_030 Hb_002662_030 Hb_002296_040--Hb_002662_030 Hb_002296_040--Hb_000326_090 Hb_000707_030 Hb_000707_030 Hb_002296_040--Hb_000707_030 Hb_007735_030 Hb_007735_030 Hb_002296_040--Hb_007735_030 Hb_000086_550 Hb_000086_550 Hb_001009_300--Hb_000086_550 Hb_005400_030 Hb_005400_030 Hb_001009_300--Hb_005400_030 Hb_003623_050 Hb_003623_050 Hb_001009_300--Hb_003623_050 Hb_001421_060 Hb_001421_060 Hb_001009_300--Hb_001421_060 Hb_001117_090 Hb_001117_090 Hb_001009_300--Hb_001117_090 Hb_003092_030 Hb_003092_030 Hb_021238_050--Hb_003092_030 Hb_006198_080 Hb_006198_080 Hb_021238_050--Hb_006198_080 Hb_037887_010 Hb_037887_010 Hb_021238_050--Hb_037887_010 Hb_000056_260 Hb_000056_260 Hb_021238_050--Hb_000056_260 Hb_021238_050--Hb_000326_090 Hb_021238_050--Hb_002296_040 Hb_007441_270 Hb_007441_270 Hb_000003_730--Hb_007441_270 Hb_004032_100 Hb_004032_100 Hb_000003_730--Hb_004032_100 Hb_031089_040 Hb_031089_040 Hb_000003_730--Hb_031089_040 Hb_000684_230 Hb_000684_230 Hb_000003_730--Hb_000684_230 Hb_000003_730--Hb_002296_040 Hb_004502_020 Hb_004502_020 Hb_000003_730--Hb_004502_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.06801 4.0859 1.71911 11.8168 10.1653 23.7756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3447 22.7306 8.40909 11.2582 7.73428

CAGE analysis