Hb_005616_020

Information

Type -
Description -
Location Contig5616: 38040-42170
Sequence    

Annotation

kegg
ID rcu:RCOM_0737170
description kinase, putative
nr
ID XP_002527556.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9LMP1
description Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1
trembl
ID B9SNI7
description Kinase, putative OS=Ricinus communis GN=RCOM_0737170 PE=3 SV=1
Gene Ontology
ID GO:0016021
description wall-associated receptor kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48810: 38283-38545 , PASA_asmbl_48811: 38596-39607 , PASA_asmbl_48812: 39655-42395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005616_020 0.0 - - kinase, putative [Ricinus communis]
2 Hb_001456_030 0.044602086 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
3 Hb_000462_120 0.0466389436 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
4 Hb_003376_060 0.0554971307 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
5 Hb_000699_220 0.0641842203 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
6 Hb_000413_030 0.0662974681 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
7 Hb_000608_090 0.0747102512 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000964_080 0.0750557305 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
9 Hb_003580_020 0.0781292571 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000729_040 0.0786723435 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
11 Hb_031330_010 0.0812176914 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
12 Hb_004846_110 0.0813896457 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
13 Hb_012114_090 0.0815587409 - - tubulin beta chain, putative [Ricinus communis]
14 Hb_011912_010 0.0831896755 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_006717_060 0.0839850605 - - PREDICTED: peroxidase 42 [Jatropha curcas]
16 Hb_070771_010 0.0865478033 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
17 Hb_000497_030 0.0869951164 - - -
18 Hb_071079_040 0.0882883469 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
19 Hb_000037_150 0.0884219399 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
20 Hb_000645_230 0.089029487 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005616_020 Hb_005616_020 Hb_001456_030 Hb_001456_030 Hb_005616_020--Hb_001456_030 Hb_000462_120 Hb_000462_120 Hb_005616_020--Hb_000462_120 Hb_003376_060 Hb_003376_060 Hb_005616_020--Hb_003376_060 Hb_000699_220 Hb_000699_220 Hb_005616_020--Hb_000699_220 Hb_000413_030 Hb_000413_030 Hb_005616_020--Hb_000413_030 Hb_000608_090 Hb_000608_090 Hb_005616_020--Hb_000608_090 Hb_001456_030--Hb_003376_060 Hb_000227_360 Hb_000227_360 Hb_001456_030--Hb_000227_360 Hb_001456_030--Hb_000462_120 Hb_001104_060 Hb_001104_060 Hb_001456_030--Hb_001104_060 Hb_000964_080 Hb_000964_080 Hb_001456_030--Hb_000964_080 Hb_003580_020 Hb_003580_020 Hb_000462_120--Hb_003580_020 Hb_005291_020 Hb_005291_020 Hb_000462_120--Hb_005291_020 Hb_000729_040 Hb_000729_040 Hb_000462_120--Hb_000729_040 Hb_027577_010 Hb_027577_010 Hb_000462_120--Hb_027577_010 Hb_011224_070 Hb_011224_070 Hb_003376_060--Hb_011224_070 Hb_003376_060--Hb_000964_080 Hb_003376_060--Hb_000413_030 Hb_003747_160 Hb_003747_160 Hb_003376_060--Hb_003747_160 Hb_006717_060 Hb_006717_060 Hb_000699_220--Hb_006717_060 Hb_012114_090 Hb_012114_090 Hb_000699_220--Hb_012114_090 Hb_000497_030 Hb_000497_030 Hb_000699_220--Hb_000497_030 Hb_001349_040 Hb_001349_040 Hb_000699_220--Hb_001349_040 Hb_000336_120 Hb_000336_120 Hb_000699_220--Hb_000336_120 Hb_011912_010 Hb_011912_010 Hb_000413_030--Hb_011912_010 Hb_064047_020 Hb_064047_020 Hb_000413_030--Hb_064047_020 Hb_000413_030--Hb_000964_080 Hb_000037_150 Hb_000037_150 Hb_000413_030--Hb_000037_150 Hb_001307_180 Hb_001307_180 Hb_000413_030--Hb_001307_180 Hb_031330_010 Hb_031330_010 Hb_000608_090--Hb_031330_010 Hb_004586_440 Hb_004586_440 Hb_000608_090--Hb_004586_440 Hb_001158_170 Hb_001158_170 Hb_000608_090--Hb_001158_170 Hb_000608_090--Hb_003376_060 Hb_000608_090--Hb_001456_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.308403 1.20713 15.0606 0 0.00842181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.119524 5.13234

CAGE analysis