Hb_005618_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig5618: 4865-7117
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10680g
description POPTRDRAFT_572513; hypothetical protein
nr
ID XP_002320929.1
description hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
swissprot
ID Q8LPH6
description Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1
trembl
ID B9I997
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10680g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb86

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48815: 5874-7191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_010 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
2 Hb_000172_070 0.0825137792 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
3 Hb_007292_050 0.0911274666 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
4 Hb_010267_030 0.1002650908 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
5 Hb_000181_390 0.1006250225 - - unknown [Lotus japonicus]
6 Hb_112145_010 0.1082624621 - - kinase, putative [Ricinus communis]
7 Hb_002725_080 0.1084919632 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_002170_010 0.1116719045 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
9 Hb_000365_190 0.1128625749 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
10 Hb_000375_150 0.1132094555 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002250_140 0.1133319827 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
12 Hb_010174_200 0.1133540364 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
13 Hb_000329_170 0.1162270302 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
14 Hb_026048_030 0.1164970614 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001518_030 0.1167065275 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_010417_110 0.1175673727 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006951_010 0.1180455915 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
18 Hb_000201_070 0.1204295416 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
19 Hb_026050_010 0.1240286976 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_024650_010 0.1241708268 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]

Gene co-expression network

sample Hb_005618_010 Hb_005618_010 Hb_000172_070 Hb_000172_070 Hb_005618_010--Hb_000172_070 Hb_007292_050 Hb_007292_050 Hb_005618_010--Hb_007292_050 Hb_010267_030 Hb_010267_030 Hb_005618_010--Hb_010267_030 Hb_000181_390 Hb_000181_390 Hb_005618_010--Hb_000181_390 Hb_112145_010 Hb_112145_010 Hb_005618_010--Hb_112145_010 Hb_002725_080 Hb_002725_080 Hb_005618_010--Hb_002725_080 Hb_000172_070--Hb_010267_030 Hb_005048_090 Hb_005048_090 Hb_000172_070--Hb_005048_090 Hb_000172_070--Hb_007292_050 Hb_000230_550 Hb_000230_550 Hb_000172_070--Hb_000230_550 Hb_002170_010 Hb_002170_010 Hb_000172_070--Hb_002170_010 Hb_114733_010 Hb_114733_010 Hb_007292_050--Hb_114733_010 Hb_173107_020 Hb_173107_020 Hb_007292_050--Hb_173107_020 Hb_010174_200 Hb_010174_200 Hb_007292_050--Hb_010174_200 Hb_002250_140 Hb_002250_140 Hb_007292_050--Hb_002250_140 Hb_000201_070 Hb_000201_070 Hb_010267_030--Hb_000201_070 Hb_010267_030--Hb_005048_090 Hb_010267_030--Hb_002170_010 Hb_010267_030--Hb_112145_010 Hb_000375_150 Hb_000375_150 Hb_000181_390--Hb_000375_150 Hb_026415_010 Hb_026415_010 Hb_000181_390--Hb_026415_010 Hb_004450_030 Hb_004450_030 Hb_000181_390--Hb_004450_030 Hb_000181_390--Hb_000172_070 Hb_010417_110 Hb_010417_110 Hb_000181_390--Hb_010417_110 Hb_112145_010--Hb_002170_010 Hb_128216_010 Hb_128216_010 Hb_112145_010--Hb_128216_010 Hb_002303_050 Hb_002303_050 Hb_112145_010--Hb_002303_050 Hb_155015_020 Hb_155015_020 Hb_112145_010--Hb_155015_020 Hb_006951_010 Hb_006951_010 Hb_112145_010--Hb_006951_010 Hb_002811_320 Hb_002811_320 Hb_112145_010--Hb_002811_320 Hb_004724_300 Hb_004724_300 Hb_002725_080--Hb_004724_300 Hb_024650_010 Hb_024650_010 Hb_002725_080--Hb_024650_010 Hb_002725_080--Hb_010417_110 Hb_000574_230 Hb_000574_230 Hb_002725_080--Hb_000574_230 Hb_009557_080 Hb_009557_080 Hb_002725_080--Hb_009557_080 Hb_006002_020 Hb_006002_020 Hb_002725_080--Hb_006002_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0891501 36.9282 13.3963 40.3992 0.10313 0.0462598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0876954 0 0.0327351 1.02234 15.1045

CAGE analysis