Hb_005618_040

Information

Type -
Description -
Location Contig5618: 30864-41161
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_040 0.0 - - -
2 Hb_000261_460 0.0736244363 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
3 Hb_007666_020 0.0883173404 - - alkaline phytoceramidase, putative [Ricinus communis]
4 Hb_025087_010 0.0954759329 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
5 Hb_001153_200 0.1023135964 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
6 Hb_000051_040 0.1042986248 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
7 Hb_000922_270 0.1060197308 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
8 Hb_000085_300 0.1072709916 - - -
9 Hb_000032_220 0.1085226255 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
10 Hb_009026_050 0.1088964305 - - vacuolar ATPase F subunit [Hevea brasiliensis]
11 Hb_183963_020 0.108960515 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
12 Hb_008695_190 0.1100028264 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
13 Hb_001999_120 0.1116287776 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
14 Hb_000086_570 0.1121868833 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
15 Hb_000196_090 0.1132487171 - - axonemal dynein light chain, putative [Ricinus communis]
16 Hb_000091_090 0.1132954456 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
17 Hb_002540_030 0.1155389877 - - hypothetical protein 32 [Hevea brasiliensis]
18 Hb_007021_020 0.116640258 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
19 Hb_000983_100 0.1172489763 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
20 Hb_007229_060 0.1204167058 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]

Gene co-expression network

sample Hb_005618_040 Hb_005618_040 Hb_000261_460 Hb_000261_460 Hb_005618_040--Hb_000261_460 Hb_007666_020 Hb_007666_020 Hb_005618_040--Hb_007666_020 Hb_025087_010 Hb_025087_010 Hb_005618_040--Hb_025087_010 Hb_001153_200 Hb_001153_200 Hb_005618_040--Hb_001153_200 Hb_000051_040 Hb_000051_040 Hb_005618_040--Hb_000051_040 Hb_000922_270 Hb_000922_270 Hb_005618_040--Hb_000922_270 Hb_000089_160 Hb_000089_160 Hb_000261_460--Hb_000089_160 Hb_000261_460--Hb_000051_040 Hb_003680_070 Hb_003680_070 Hb_000261_460--Hb_003680_070 Hb_007021_020 Hb_007021_020 Hb_000261_460--Hb_007021_020 Hb_100506_010 Hb_100506_010 Hb_000261_460--Hb_100506_010 Hb_007666_020--Hb_000922_270 Hb_002540_030 Hb_002540_030 Hb_007666_020--Hb_002540_030 Hb_002527_070 Hb_002527_070 Hb_007666_020--Hb_002527_070 Hb_001711_030 Hb_001711_030 Hb_007666_020--Hb_001711_030 Hb_002411_200 Hb_002411_200 Hb_007666_020--Hb_002411_200 Hb_183963_020 Hb_183963_020 Hb_025087_010--Hb_183963_020 Hb_001366_230 Hb_001366_230 Hb_025087_010--Hb_001366_230 Hb_008695_190 Hb_008695_190 Hb_025087_010--Hb_008695_190 Hb_009026_050 Hb_009026_050 Hb_025087_010--Hb_009026_050 Hb_001722_040 Hb_001722_040 Hb_025087_010--Hb_001722_040 Hb_005000_290 Hb_005000_290 Hb_025087_010--Hb_005000_290 Hb_001153_200--Hb_007666_020 Hb_001153_200--Hb_025087_010 Hb_001153_200--Hb_009026_050 Hb_002471_160 Hb_002471_160 Hb_001153_200--Hb_002471_160 Hb_000934_030 Hb_000934_030 Hb_001153_200--Hb_000934_030 Hb_000051_040--Hb_007021_020 Hb_000051_040--Hb_001711_030 Hb_000051_040--Hb_000922_270 Hb_009404_020 Hb_009404_020 Hb_000051_040--Hb_009404_020 Hb_003408_020 Hb_003408_020 Hb_000051_040--Hb_003408_020 Hb_000922_270--Hb_003408_020 Hb_010172_070 Hb_010172_070 Hb_000922_270--Hb_010172_070 Hb_000922_270--Hb_001711_030 Hb_014720_080 Hb_014720_080 Hb_000922_270--Hb_014720_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4345 2.97043 0.773233 0.825912 6.93949 9.77979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2309 15.542 14.2769 5.78243 0.339388

CAGE analysis