Hb_005618_110

Information

Type transcription factor
Description TF Family: WRKY
Location Contig5618: 84719-87750
Sequence    

Annotation

kegg
ID rcu:RCOM_1343180
description WRKY transcription factor, putative
nr
ID XP_002515176.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9ZSI7
description Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2
trembl
ID B9RN37
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1343180 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 47

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_110 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_000254_150 0.1026759673 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
3 Hb_040963_010 0.1169940423 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
4 Hb_148121_030 0.1360882103 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
5 Hb_000149_120 0.1376590613 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
6 Hb_032299_070 0.1389068525 - - -
7 Hb_002740_170 0.1416340233 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
8 Hb_018212_020 0.143331034 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
9 Hb_007382_070 0.1472791153 - - PREDICTED: MAPK-interacting and spindle-stabilizing protein-like [Jatropha curcas]
10 Hb_010813_030 0.1485684748 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
11 Hb_006120_020 0.1506808949 - - -
12 Hb_002928_220 0.1535030951 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
13 Hb_006569_110 0.1606336609 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001675_130 0.1703387715 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
15 Hb_006970_100 0.1722177697 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_006651_010 0.1773453872 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
17 Hb_010812_140 0.1773801896 - - protein binding protein, putative [Ricinus communis]
18 Hb_000177_120 0.1810113904 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
19 Hb_003767_010 0.1849558935 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
20 Hb_001388_020 0.1861819865 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]

Gene co-expression network

sample Hb_005618_110 Hb_005618_110 Hb_000254_150 Hb_000254_150 Hb_005618_110--Hb_000254_150 Hb_040963_010 Hb_040963_010 Hb_005618_110--Hb_040963_010 Hb_148121_030 Hb_148121_030 Hb_005618_110--Hb_148121_030 Hb_000149_120 Hb_000149_120 Hb_005618_110--Hb_000149_120 Hb_032299_070 Hb_032299_070 Hb_005618_110--Hb_032299_070 Hb_002740_170 Hb_002740_170 Hb_005618_110--Hb_002740_170 Hb_006569_110 Hb_006569_110 Hb_000254_150--Hb_006569_110 Hb_018212_020 Hb_018212_020 Hb_000254_150--Hb_018212_020 Hb_010813_030 Hb_010813_030 Hb_000254_150--Hb_010813_030 Hb_001675_130 Hb_001675_130 Hb_000254_150--Hb_001675_130 Hb_006938_010 Hb_006938_010 Hb_000254_150--Hb_006938_010 Hb_040963_010--Hb_148121_030 Hb_040963_010--Hb_000149_120 Hb_001388_020 Hb_001388_020 Hb_040963_010--Hb_001388_020 Hb_002928_220 Hb_002928_220 Hb_040963_010--Hb_002928_220 Hb_040963_010--Hb_002740_170 Hb_120268_010 Hb_120268_010 Hb_148121_030--Hb_120268_010 Hb_148121_030--Hb_001388_020 Hb_000203_060 Hb_000203_060 Hb_148121_030--Hb_000203_060 Hb_148121_030--Hb_002740_170 Hb_006120_020 Hb_006120_020 Hb_000149_120--Hb_006120_020 Hb_000149_120--Hb_002928_220 Hb_007382_070 Hb_007382_070 Hb_000149_120--Hb_007382_070 Hb_024570_020 Hb_024570_020 Hb_000149_120--Hb_024570_020 Hb_006970_100 Hb_006970_100 Hb_000149_120--Hb_006970_100 Hb_000959_370 Hb_000959_370 Hb_032299_070--Hb_000959_370 Hb_044313_010 Hb_044313_010 Hb_032299_070--Hb_044313_010 Hb_002142_010 Hb_002142_010 Hb_032299_070--Hb_002142_010 Hb_006013_030 Hb_006013_030 Hb_032299_070--Hb_006013_030 Hb_011242_070 Hb_011242_070 Hb_032299_070--Hb_011242_070 Hb_003878_100 Hb_003878_100 Hb_002740_170--Hb_003878_100 Hb_002740_170--Hb_000254_150 Hb_002740_170--Hb_001675_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.65579 0.711939 0.122655 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.020762 0.0392101 4.89707 2.88298

CAGE analysis