Hb_005618_160

Information

Type -
Description -
Location Contig5618: 132613-139357
Sequence    

Annotation

kegg
ID pop:POPTR_0002s18810g
description POPTRDRAFT_552617; tRNA synthetase-related family protein
nr
ID XP_012089504.1
description PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
swissprot
ID Q8CGC7
description Bifunctional glutamate/proline--tRNA ligase OS=Mus musculus GN=Eprs PE=1 SV=4
trembl
ID A0A067JHA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00194 PE=3 SV=1
Gene Ontology
ID GO:0005737
description proline--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_160 0.0 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
2 Hb_000174_110 0.0617327508 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
3 Hb_054865_100 0.0659835357 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
4 Hb_011970_030 0.0663341662 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
5 Hb_000462_140 0.0698558882 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
6 Hb_003010_030 0.0701008069 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
7 Hb_002495_040 0.0731570895 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
8 Hb_003030_070 0.0732467869 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
9 Hb_005276_210 0.073591751 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
10 Hb_000093_160 0.0757703654 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
11 Hb_002739_050 0.0760396416 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
12 Hb_000661_250 0.0772621845 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
13 Hb_000189_340 0.0778288004 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
14 Hb_001586_040 0.0785521651 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
15 Hb_066182_010 0.0792388909 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
16 Hb_001564_130 0.0792419771 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000960_060 0.0800865352 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
18 Hb_001195_760 0.0801178641 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
19 Hb_015978_060 0.0808138447 - - unnamed protein product [Vitis vinifera]
20 Hb_000640_240 0.0816476672 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005618_160 Hb_005618_160 Hb_000174_110 Hb_000174_110 Hb_005618_160--Hb_000174_110 Hb_054865_100 Hb_054865_100 Hb_005618_160--Hb_054865_100 Hb_011970_030 Hb_011970_030 Hb_005618_160--Hb_011970_030 Hb_000462_140 Hb_000462_140 Hb_005618_160--Hb_000462_140 Hb_003010_030 Hb_003010_030 Hb_005618_160--Hb_003010_030 Hb_002495_040 Hb_002495_040 Hb_005618_160--Hb_002495_040 Hb_010068_040 Hb_010068_040 Hb_000174_110--Hb_010068_040 Hb_006620_020 Hb_006620_020 Hb_000174_110--Hb_006620_020 Hb_000174_110--Hb_054865_100 Hb_002175_030 Hb_002175_030 Hb_000174_110--Hb_002175_030 Hb_001486_340 Hb_001486_340 Hb_000174_110--Hb_001486_340 Hb_066182_010 Hb_066182_010 Hb_054865_100--Hb_066182_010 Hb_005276_210 Hb_005276_210 Hb_054865_100--Hb_005276_210 Hb_054865_100--Hb_006620_020 Hb_000327_120 Hb_000327_120 Hb_054865_100--Hb_000327_120 Hb_000645_050 Hb_000645_050 Hb_054865_100--Hb_000645_050 Hb_003292_040 Hb_003292_040 Hb_011970_030--Hb_003292_040 Hb_002233_150 Hb_002233_150 Hb_011970_030--Hb_002233_150 Hb_000640_240 Hb_000640_240 Hb_011970_030--Hb_000640_240 Hb_001454_400 Hb_001454_400 Hb_011970_030--Hb_001454_400 Hb_001564_130 Hb_001564_130 Hb_011970_030--Hb_001564_130 Hb_000661_250 Hb_000661_250 Hb_000462_140--Hb_000661_250 Hb_070739_010 Hb_070739_010 Hb_000462_140--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_000462_140--Hb_001259_090 Hb_000462_140--Hb_003010_030 Hb_022250_030 Hb_022250_030 Hb_000462_140--Hb_022250_030 Hb_000093_160 Hb_000093_160 Hb_003010_030--Hb_000093_160 Hb_096563_010 Hb_096563_010 Hb_003010_030--Hb_096563_010 Hb_012008_020 Hb_012008_020 Hb_003010_030--Hb_012008_020 Hb_001258_090 Hb_001258_090 Hb_003010_030--Hb_001258_090 Hb_000120_790 Hb_000120_790 Hb_003010_030--Hb_000120_790 Hb_000089_220 Hb_000089_220 Hb_003010_030--Hb_000089_220 Hb_000465_430 Hb_000465_430 Hb_002495_040--Hb_000465_430 Hb_003030_070 Hb_003030_070 Hb_002495_040--Hb_003030_070 Hb_001369_180 Hb_001369_180 Hb_002495_040--Hb_001369_180 Hb_012092_010 Hb_012092_010 Hb_002495_040--Hb_012092_010 Hb_000092_100 Hb_000092_100 Hb_002495_040--Hb_000092_100 Hb_001936_080 Hb_001936_080 Hb_002495_040--Hb_001936_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.19976 3.41782 3.51715 3.76117 8.64439 7.07968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.03615 7.70693 3.10739 2.92964 2.71678

CAGE analysis