Hb_005618_170

Information

Type -
Description -
Location Contig5618: 142488-147803
Sequence    

Annotation

kegg
ID pop:POPTR_0002s18820g
description POPTRDRAFT_552616; transport family protein
nr
ID XP_012083009.1
description PREDICTED: protein transport protein SEC23 [Jatropha curcas]
swissprot
ID A5DA00
description Protein transport protein SEC23 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SEC23 PE=3 SV=3
trembl
ID A0A067JWT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14113 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48843: 142603-147736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_170 0.0 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
2 Hb_005305_080 0.0512973415 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
3 Hb_004254_120 0.055191669 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000876_070 0.0555118887 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
5 Hb_032202_190 0.0566678115 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
6 Hb_007416_320 0.0592371266 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000085_050 0.0594131758 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_003092_040 0.0616311113 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
9 Hb_000504_140 0.0660652424 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
10 Hb_002016_110 0.0664013163 - - transducin family protein [Populus trichocarpa]
11 Hb_002739_100 0.0665383526 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
12 Hb_005663_060 0.0680562711 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
13 Hb_007691_030 0.0681055504 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
14 Hb_007441_200 0.0683348011 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
15 Hb_005779_060 0.0692638105 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
16 Hb_006400_030 0.0699192893 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
17 Hb_001758_100 0.072471098 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
18 Hb_000030_300 0.0725845966 - - Thioredoxin, putative [Ricinus communis]
19 Hb_002105_040 0.0738551712 - - -
20 Hb_004907_110 0.0747390769 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005618_170 Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_005618_170--Hb_005305_080 Hb_004254_120 Hb_004254_120 Hb_005618_170--Hb_004254_120 Hb_000876_070 Hb_000876_070 Hb_005618_170--Hb_000876_070 Hb_032202_190 Hb_032202_190 Hb_005618_170--Hb_032202_190 Hb_007416_320 Hb_007416_320 Hb_005618_170--Hb_007416_320 Hb_000085_050 Hb_000085_050 Hb_005618_170--Hb_000085_050 Hb_010504_020 Hb_010504_020 Hb_005305_080--Hb_010504_020 Hb_000510_130 Hb_000510_130 Hb_005305_080--Hb_000510_130 Hb_005305_080--Hb_004254_120 Hb_005305_080--Hb_032202_190 Hb_005305_080--Hb_000876_070 Hb_004254_120--Hb_032202_190 Hb_000206_210 Hb_000206_210 Hb_004254_120--Hb_000206_210 Hb_004254_120--Hb_000876_070 Hb_000928_210 Hb_000928_210 Hb_004254_120--Hb_000928_210 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005663_060 Hb_005663_060 Hb_032202_190--Hb_005663_060 Hb_032202_190--Hb_007691_030 Hb_001633_210 Hb_001633_210 Hb_007416_320--Hb_001633_210 Hb_000058_060 Hb_000058_060 Hb_007416_320--Hb_000058_060 Hb_000062_220 Hb_000062_220 Hb_007416_320--Hb_000062_220 Hb_007416_320--Hb_000876_070 Hb_000120_470 Hb_000120_470 Hb_007416_320--Hb_000120_470 Hb_002183_090 Hb_002183_090 Hb_000085_050--Hb_002183_090 Hb_058999_020 Hb_058999_020 Hb_000085_050--Hb_058999_020 Hb_000976_170 Hb_000976_170 Hb_000085_050--Hb_000976_170 Hb_108350_010 Hb_108350_010 Hb_000085_050--Hb_108350_010 Hb_000107_330 Hb_000107_330 Hb_000085_050--Hb_000107_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0509 6.91501 4.59038 6.90544 10.4197 10.7776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3752 15.2027 14.3538 10.0301 5.80298

CAGE analysis