Hb_005622_020

Information

Type -
Description -
Location Contig5622: 30224-34021
Sequence    

Annotation

kegg
ID pop:POPTR_0008s23020g
description hypothetical protein
nr
ID XP_012073206.1
description PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
swissprot
ID Q9SSR1
description DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana GN=At1g52590 PE=2 SV=1
trembl
ID E6NUB8
description JHL06P13.8 protein OS=Jatropha curcas GN=JHL06P13.8 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48871: 30511-33701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005622_020 0.0 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
2 Hb_000108_240 0.1339166989 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
3 Hb_004041_050 0.1381114177 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
4 Hb_006634_100 0.1448015453 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003050_360 0.1496189174 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
6 Hb_002028_110 0.1543867339 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
7 Hb_000193_340 0.1571226626 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
8 Hb_001433_150 0.1571531346 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005470_030 0.158143185 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
10 Hb_000025_540 0.1599237061 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
11 Hb_001180_010 0.1609808672 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
12 Hb_004724_170 0.1610572611 - - PREDICTED: rho GTPase-activating protein 1 [Jatropha curcas]
13 Hb_001377_530 0.1633374391 - - NC domain-containing family protein [Populus trichocarpa]
14 Hb_008747_010 0.1649226563 - - PREDICTED: protein argonaute 2-like isoform X1 [Jatropha curcas]
15 Hb_006153_150 0.1687094275 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
16 Hb_002701_070 0.1706867565 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
17 Hb_002687_160 0.1710097572 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
18 Hb_006153_160 0.1715799285 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]
19 Hb_002641_120 0.1721319397 - - PREDICTED: calmodulin [Jatropha curcas]
20 Hb_007101_260 0.1724358201 - - altered response to gravity (arg1), plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_005622_020 Hb_005622_020 Hb_000108_240 Hb_000108_240 Hb_005622_020--Hb_000108_240 Hb_004041_050 Hb_004041_050 Hb_005622_020--Hb_004041_050 Hb_006634_100 Hb_006634_100 Hb_005622_020--Hb_006634_100 Hb_003050_360 Hb_003050_360 Hb_005622_020--Hb_003050_360 Hb_002028_110 Hb_002028_110 Hb_005622_020--Hb_002028_110 Hb_000193_340 Hb_000193_340 Hb_005622_020--Hb_000193_340 Hb_048476_140 Hb_048476_140 Hb_000108_240--Hb_048476_140 Hb_003408_010 Hb_003408_010 Hb_000108_240--Hb_003408_010 Hb_000108_240--Hb_004041_050 Hb_001180_010 Hb_001180_010 Hb_000108_240--Hb_001180_010 Hb_004650_030 Hb_004650_030 Hb_000108_240--Hb_004650_030 Hb_004041_050--Hb_048476_140 Hb_004041_050--Hb_001180_010 Hb_000076_030 Hb_000076_030 Hb_004041_050--Hb_000076_030 Hb_042083_030 Hb_042083_030 Hb_004041_050--Hb_042083_030 Hb_121089_050 Hb_121089_050 Hb_004041_050--Hb_121089_050 Hb_002759_220 Hb_002759_220 Hb_004041_050--Hb_002759_220 Hb_000935_080 Hb_000935_080 Hb_006634_100--Hb_000935_080 Hb_004163_030 Hb_004163_030 Hb_006634_100--Hb_004163_030 Hb_006634_100--Hb_003050_360 Hb_002662_040 Hb_002662_040 Hb_006634_100--Hb_002662_040 Hb_006951_030 Hb_006951_030 Hb_006634_100--Hb_006951_030 Hb_000689_050 Hb_000689_050 Hb_003050_360--Hb_000689_050 Hb_007101_260 Hb_007101_260 Hb_003050_360--Hb_007101_260 Hb_112064_010 Hb_112064_010 Hb_003050_360--Hb_112064_010 Hb_004545_080 Hb_004545_080 Hb_003050_360--Hb_004545_080 Hb_011174_040 Hb_011174_040 Hb_003050_360--Hb_011174_040 Hb_001377_530 Hb_001377_530 Hb_003050_360--Hb_001377_530 Hb_000357_070 Hb_000357_070 Hb_002028_110--Hb_000357_070 Hb_000388_080 Hb_000388_080 Hb_002028_110--Hb_000388_080 Hb_001433_150 Hb_001433_150 Hb_002028_110--Hb_001433_150 Hb_002028_110--Hb_000689_050 Hb_012807_150 Hb_012807_150 Hb_002028_110--Hb_012807_150 Hb_002028_110--Hb_007101_260 Hb_006153_160 Hb_006153_160 Hb_000193_340--Hb_006153_160 Hb_000193_340--Hb_007101_260 Hb_161396_010 Hb_161396_010 Hb_000193_340--Hb_161396_010 Hb_000193_340--Hb_002759_220 Hb_000808_150 Hb_000808_150 Hb_000193_340--Hb_000808_150 Hb_000328_010 Hb_000328_010 Hb_000193_340--Hb_000328_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.91422 13.4703 76.6228 56.1506 1.03122 4.12385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.58872 5.24086 32.5155 16.0707 58.4316

CAGE analysis