Hb_005625_050

Information

Type -
Description -
Location Contig5625: 63920-69489
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015715mg
description hypothetical protein
nr
ID XP_007221295.1
description hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
swissprot
ID -
description -
trembl
ID M5X976
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024499mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005625_050 0.0 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
2 Hb_007757_090 0.0077966824 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
3 Hb_006261_010 0.0142101258 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
4 Hb_019299_050 0.0218327067 - - -
5 Hb_000946_020 0.0491180637 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
6 Hb_000967_030 0.0616713274 - - -
7 Hb_169597_010 0.0741417265 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
8 Hb_000159_030 0.0792965865 - - putative glycosyltransferase, partial [Aralia elata]
9 Hb_003927_030 0.0793384515 - - unnamed protein product [Coffea canephora]
10 Hb_000052_030 0.0806746857 - - -
11 Hb_159957_020 0.0810003556 - - -
12 Hb_002570_050 0.1038990244 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
13 Hb_055880_010 0.1043195278 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_009142_030 0.1073088885 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_001514_160 0.1092412135 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
16 Hb_018202_060 0.110058493 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
17 Hb_014034_010 0.1139096648 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_002890_050 0.1148738781 - - -
19 Hb_001221_120 0.1173178813 - - cytochrome P450, putative [Ricinus communis]
20 Hb_093039_010 0.1221813577 - - JHL22C18.10 [Jatropha curcas]

Gene co-expression network

sample Hb_005625_050 Hb_005625_050 Hb_007757_090 Hb_007757_090 Hb_005625_050--Hb_007757_090 Hb_006261_010 Hb_006261_010 Hb_005625_050--Hb_006261_010 Hb_019299_050 Hb_019299_050 Hb_005625_050--Hb_019299_050 Hb_000946_020 Hb_000946_020 Hb_005625_050--Hb_000946_020 Hb_000967_030 Hb_000967_030 Hb_005625_050--Hb_000967_030 Hb_169597_010 Hb_169597_010 Hb_005625_050--Hb_169597_010 Hb_007757_090--Hb_006261_010 Hb_007757_090--Hb_019299_050 Hb_007757_090--Hb_000946_020 Hb_007757_090--Hb_169597_010 Hb_007757_090--Hb_000967_030 Hb_006261_010--Hb_000946_020 Hb_006261_010--Hb_019299_050 Hb_006261_010--Hb_169597_010 Hb_003927_030 Hb_003927_030 Hb_006261_010--Hb_003927_030 Hb_019299_050--Hb_000967_030 Hb_000159_030 Hb_000159_030 Hb_019299_050--Hb_000159_030 Hb_159957_020 Hb_159957_020 Hb_019299_050--Hb_159957_020 Hb_000946_020--Hb_169597_010 Hb_000946_020--Hb_003927_030 Hb_000052_030 Hb_000052_030 Hb_000946_020--Hb_000052_030 Hb_000967_030--Hb_000159_030 Hb_000967_030--Hb_159957_020 Hb_055880_010 Hb_055880_010 Hb_000967_030--Hb_055880_010 Hb_009142_030 Hb_009142_030 Hb_000967_030--Hb_009142_030 Hb_001514_160 Hb_001514_160 Hb_000967_030--Hb_001514_160 Hb_169597_010--Hb_003927_030 Hb_169597_010--Hb_000052_030 Hb_002570_050 Hb_002570_050 Hb_169597_010--Hb_002570_050 Hb_093039_010 Hb_093039_010 Hb_169597_010--Hb_093039_010 Hb_000190_130 Hb_000190_130 Hb_169597_010--Hb_000190_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.135667 0.0698272

CAGE analysis