Hb_005643_020

Information

Type -
Description -
Location Contig5643: 11637-14913
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12800g
description POPTRDRAFT_751000; hypothetical protein
nr
ID XP_012088687.1
description PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
swissprot
ID Q9SFX2
description U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1
trembl
ID A0A067JKC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23076 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 43-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48959: 10980-13239
cDNA
(Sanger)
(ID:Location)		 050_G02.ab1: 10980-12261

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005643_020 0.0 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
2 Hb_001405_260 0.0717140616 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
3 Hb_005588_010 0.0761792139 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
4 Hb_000522_120 0.1001161276 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
5 Hb_005648_030 0.1025123272 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
6 Hb_044026_010 0.1091832091 - - PREDICTED: cytochrome P450 93A3-like [Jatropha curcas]
7 Hb_002193_050 0.1143960775 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
8 Hb_004157_080 0.1162818474 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
9 Hb_005946_190 0.1267134583 - - hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]
10 Hb_110048_010 0.1287728239 - - PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris]
11 Hb_111908_010 0.12886132 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_033153_010 0.1329720607 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
13 Hb_022768_010 0.1335604972 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
14 Hb_031862_150 0.1341763444 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
15 Hb_007850_050 0.1345112881 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
16 Hb_022630_010 0.1347628767 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
17 Hb_078477_010 0.1376104018 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
18 Hb_004117_360 0.1387615137 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
19 Hb_000473_010 0.1401182362 - - PREDICTED: galactolipase DONGLE, chloroplastic [Jatropha curcas]
20 Hb_000563_380 0.1426558825 - - hypothetical protein CICLE_v10007206mg [Citrus clementina]

Gene co-expression network

sample Hb_005643_020 Hb_005643_020 Hb_001405_260 Hb_001405_260 Hb_005643_020--Hb_001405_260 Hb_005588_010 Hb_005588_010 Hb_005643_020--Hb_005588_010 Hb_000522_120 Hb_000522_120 Hb_005643_020--Hb_000522_120 Hb_005648_030 Hb_005648_030 Hb_005643_020--Hb_005648_030 Hb_044026_010 Hb_044026_010 Hb_005643_020--Hb_044026_010 Hb_002193_050 Hb_002193_050 Hb_005643_020--Hb_002193_050 Hb_001405_260--Hb_044026_010 Hb_001405_260--Hb_005648_030 Hb_001405_260--Hb_005588_010 Hb_078477_010 Hb_078477_010 Hb_001405_260--Hb_078477_010 Hb_022630_010 Hb_022630_010 Hb_001405_260--Hb_022630_010 Hb_005588_010--Hb_005648_030 Hb_005588_010--Hb_000522_120 Hb_033153_010 Hb_033153_010 Hb_005588_010--Hb_033153_010 Hb_005588_010--Hb_022630_010 Hb_141990_050 Hb_141990_050 Hb_000522_120--Hb_141990_050 Hb_031862_150 Hb_031862_150 Hb_000522_120--Hb_031862_150 Hb_007328_010 Hb_007328_010 Hb_000522_120--Hb_007328_010 Hb_022768_010 Hb_022768_010 Hb_000522_120--Hb_022768_010 Hb_005648_030--Hb_078477_010 Hb_005648_030--Hb_022630_010 Hb_005648_030--Hb_044026_010 Hb_005648_030--Hb_033153_010 Hb_110048_010 Hb_110048_010 Hb_044026_010--Hb_110048_010 Hb_000333_150 Hb_000333_150 Hb_044026_010--Hb_000333_150 Hb_004157_080 Hb_004157_080 Hb_044026_010--Hb_004157_080 Hb_111908_010 Hb_111908_010 Hb_044026_010--Hb_111908_010 Hb_000473_010 Hb_000473_010 Hb_002193_050--Hb_000473_010 Hb_000699_200 Hb_000699_200 Hb_002193_050--Hb_000699_200 Hb_003683_090 Hb_003683_090 Hb_002193_050--Hb_003683_090 Hb_002193_050--Hb_022630_010 Hb_002193_050--Hb_005648_030 Hb_000890_190 Hb_000890_190 Hb_002193_050--Hb_000890_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0229968 14.2296 1.26387 0.274171 0 0.00573284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.245539 0.236034

CAGE analysis