Hb_005648_010

Information

Type -
Description -
Location Contig5648: 8568-14320
Sequence    

Annotation

kegg
ID fve:101302203
description malate dehydrogenase, glyoxysomal-like
nr
ID XP_012079494.1
description PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
swissprot
ID P19446
description Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1
trembl
ID A0A061DH85
description Malate dehydrogenase OS=Theobroma cacao GN=TCM_000888 PE=3 SV=1
Gene Ontology
ID GO:0030060
description malate glyoxysomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48964: 8796-14318
cDNA
(Sanger)
(ID:Location)		 037_A07.ab1: 8801-11649 , 043_E08.ab1: 8796-11601

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005648_010 0.0 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
2 Hb_002093_060 0.0588432779 - - phosphoprotein phosphatase, putative [Ricinus communis]
3 Hb_002357_060 0.0702841953 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
4 Hb_004880_150 0.0759469014 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
5 Hb_000115_150 0.0770398641 - - PREDICTED: IST1 homolog [Jatropha curcas]
6 Hb_000025_190 0.0774303 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
7 Hb_000120_370 0.0799792405 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
8 Hb_000035_390 0.0801774091 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
9 Hb_000367_090 0.0821597823 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
10 Hb_002301_100 0.0822649136 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
11 Hb_001221_020 0.0826109591 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
12 Hb_007383_020 0.0833231907 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001493_150 0.0840828283 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
14 Hb_003988_050 0.0853014215 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
15 Hb_000046_170 0.0856339321 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
16 Hb_000841_050 0.0857157059 - - hypothetical protein L484_019972 [Morus notabilis]
17 Hb_001799_060 0.0866055351 - - Rab6 [Hevea brasiliensis]
18 Hb_002477_290 0.0869491395 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
19 Hb_000185_220 0.087183969 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
20 Hb_062537_010 0.0874253714 - - hypothetical protein JCGZ_13884 [Jatropha curcas]

Gene co-expression network

sample Hb_005648_010 Hb_005648_010 Hb_002093_060 Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_004880_150 Hb_004880_150 Hb_005648_010--Hb_004880_150 Hb_000115_150 Hb_000115_150 Hb_005648_010--Hb_000115_150 Hb_000025_190 Hb_000025_190 Hb_005648_010--Hb_000025_190 Hb_000120_370 Hb_000120_370 Hb_005648_010--Hb_000120_370 Hb_002301_100 Hb_002301_100 Hb_002093_060--Hb_002301_100 Hb_002093_060--Hb_000120_370 Hb_001957_010 Hb_001957_010 Hb_002093_060--Hb_001957_010 Hb_002093_060--Hb_000115_150 Hb_012678_020 Hb_012678_020 Hb_002093_060--Hb_012678_020 Hb_000367_090 Hb_000367_090 Hb_002357_060--Hb_000367_090 Hb_023001_040 Hb_023001_040 Hb_002357_060--Hb_023001_040 Hb_002357_060--Hb_004880_150 Hb_000179_270 Hb_000179_270 Hb_002357_060--Hb_000179_270 Hb_000167_010 Hb_000167_010 Hb_002357_060--Hb_000167_010 Hb_001221_020 Hb_001221_020 Hb_004880_150--Hb_001221_020 Hb_003776_060 Hb_003776_060 Hb_004880_150--Hb_003776_060 Hb_002477_290 Hb_002477_290 Hb_004880_150--Hb_002477_290 Hb_002811_100 Hb_002811_100 Hb_004880_150--Hb_002811_100 Hb_004880_150--Hb_000025_190 Hb_000115_150--Hb_000120_370 Hb_003988_050 Hb_003988_050 Hb_000115_150--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000115_150--Hb_062537_010 Hb_001104_100 Hb_001104_100 Hb_000115_150--Hb_001104_100 Hb_000115_150--Hb_000025_190 Hb_000025_190--Hb_062537_010 Hb_002660_170 Hb_002660_170 Hb_000025_190--Hb_002660_170 Hb_000025_190--Hb_003988_050 Hb_005725_130 Hb_005725_130 Hb_000120_370--Hb_005725_130 Hb_001828_180 Hb_001828_180 Hb_000120_370--Hb_001828_180 Hb_000120_370--Hb_002301_100 Hb_000120_370--Hb_000167_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.17695 7.64456 11.8819 24.0821 6.76236 8.42767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8081 13.4934 8.75621 24.6377 17.9272

CAGE analysis