Hb_005648_030

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5648: 45516-47212
Sequence    

Annotation

kegg
ID pmum:103335646
description transcription factor bHLH25-like
nr
ID XP_012079597.1
description PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
swissprot
ID Q9T072
description Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2
trembl
ID A0A067KJZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12605 PE=4 SV=1
Gene Ontology
ID GO:0016597
description transcription factor bhlh18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48967: 45514-46111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005648_030 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
2 Hb_078477_010 0.0595534728 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
3 Hb_022630_010 0.063599948 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
4 Hb_001405_260 0.069231602 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
5 Hb_044026_010 0.0943814417 - - PREDICTED: cytochrome P450 93A3-like [Jatropha curcas]
6 Hb_005588_010 0.0948846522 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
7 Hb_033153_010 0.0993124795 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
8 Hb_002193_050 0.0999238455 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
9 Hb_007850_050 0.1000957531 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
10 Hb_000333_150 0.1008488126 - - hypothetical protein RCOM_0711500 [Ricinus communis]
11 Hb_005643_020 0.1025123272 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
12 Hb_001403_070 0.1114691924 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
13 Hb_000959_290 0.1169365117 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
14 Hb_004656_030 0.1222982022 - - putative pectin methylesterase family protein [Populus trichocarpa]
15 Hb_001511_130 0.1233488915 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]
16 Hb_004994_070 0.1269793737 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
17 Hb_001190_020 0.127703268 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_000699_200 0.1299602612 - - hypothetical protein POPTR_0019s02340g [Populus trichocarpa]
19 Hb_027913_010 0.1332251373 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_110048_010 0.1371766694 - - PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_005648_030 Hb_005648_030 Hb_078477_010 Hb_078477_010 Hb_005648_030--Hb_078477_010 Hb_022630_010 Hb_022630_010 Hb_005648_030--Hb_022630_010 Hb_001405_260 Hb_001405_260 Hb_005648_030--Hb_001405_260 Hb_044026_010 Hb_044026_010 Hb_005648_030--Hb_044026_010 Hb_005588_010 Hb_005588_010 Hb_005648_030--Hb_005588_010 Hb_033153_010 Hb_033153_010 Hb_005648_030--Hb_033153_010 Hb_078477_010--Hb_022630_010 Hb_000333_150 Hb_000333_150 Hb_078477_010--Hb_000333_150 Hb_004656_030 Hb_004656_030 Hb_078477_010--Hb_004656_030 Hb_078477_010--Hb_001405_260 Hb_078477_010--Hb_044026_010 Hb_022630_010--Hb_004656_030 Hb_027913_010 Hb_027913_010 Hb_022630_010--Hb_027913_010 Hb_002193_050 Hb_002193_050 Hb_022630_010--Hb_002193_050 Hb_001403_070 Hb_001403_070 Hb_022630_010--Hb_001403_070 Hb_001405_260--Hb_044026_010 Hb_005643_020 Hb_005643_020 Hb_001405_260--Hb_005643_020 Hb_001405_260--Hb_005588_010 Hb_001405_260--Hb_022630_010 Hb_110048_010 Hb_110048_010 Hb_044026_010--Hb_110048_010 Hb_044026_010--Hb_000333_150 Hb_004157_080 Hb_004157_080 Hb_044026_010--Hb_004157_080 Hb_111908_010 Hb_111908_010 Hb_044026_010--Hb_111908_010 Hb_005588_010--Hb_005643_020 Hb_000522_120 Hb_000522_120 Hb_005588_010--Hb_000522_120 Hb_005588_010--Hb_033153_010 Hb_005588_010--Hb_022630_010 Hb_000414_100 Hb_000414_100 Hb_033153_010--Hb_000414_100 Hb_002760_060 Hb_002760_060 Hb_033153_010--Hb_002760_060 Hb_033153_010--Hb_001405_260 Hb_007850_050 Hb_007850_050 Hb_033153_010--Hb_007850_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 21.716 0.9489 0.53008 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0475382 0 0 0.585713 0.0767657

CAGE analysis