Hb_005650_010

Information

Type -
Description -
Location Contig5650: 29407-33821
Sequence    

Annotation

kegg
ID rcu:RCOM_1327430
description ATP binding protein, putative
nr
ID XP_002520069.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LFE4
description WEB family protein At5g16730, chloroplastic OS=Arabidopsis thaliana GN=At5g16730 PE=1 SV=1
trembl
ID B9S250
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1327430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48989: 29565-34235 , PASA_asmbl_48990: 30121-34235 , PASA_asmbl_48991: 33246-33665
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005650_010 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_003581_200 0.0483135535 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
3 Hb_004679_030 0.0688921164 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
4 Hb_002027_080 0.0693994419 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
5 Hb_000046_500 0.0710095435 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
6 Hb_079526_040 0.0727200231 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
7 Hb_000359_210 0.0745254397 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002495_080 0.0748577922 - - PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]
9 Hb_000049_020 0.0763864627 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
10 Hb_102698_010 0.0765408532 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
11 Hb_002046_160 0.0767898319 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_008511_020 0.0776694531 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
13 Hb_001518_080 0.0785209889 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
14 Hb_009569_040 0.0786465729 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
15 Hb_000256_150 0.080976808 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
16 Hb_003498_080 0.0824083413 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
17 Hb_019181_040 0.0830695029 - - component of oligomeric golgi complex, putative [Ricinus communis]
18 Hb_010515_020 0.0837956407 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
19 Hb_073171_070 0.0839612553 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
20 Hb_010142_020 0.0843989905 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005650_010 Hb_005650_010 Hb_003581_200 Hb_003581_200 Hb_005650_010--Hb_003581_200 Hb_004679_030 Hb_004679_030 Hb_005650_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_005650_010--Hb_002027_080 Hb_000046_500 Hb_000046_500 Hb_005650_010--Hb_000046_500 Hb_079526_040 Hb_079526_040 Hb_005650_010--Hb_079526_040 Hb_000359_210 Hb_000359_210 Hb_005650_010--Hb_000359_210 Hb_000212_230 Hb_000212_230 Hb_003581_200--Hb_000212_230 Hb_003581_200--Hb_002027_080 Hb_000345_160 Hb_000345_160 Hb_003581_200--Hb_000345_160 Hb_003581_200--Hb_079526_040 Hb_001518_080 Hb_001518_080 Hb_003581_200--Hb_001518_080 Hb_000809_230 Hb_000809_230 Hb_004679_030--Hb_000809_230 Hb_003544_160 Hb_003544_160 Hb_004679_030--Hb_003544_160 Hb_009296_040 Hb_009296_040 Hb_004679_030--Hb_009296_040 Hb_001377_350 Hb_001377_350 Hb_004679_030--Hb_001377_350 Hb_005582_040 Hb_005582_040 Hb_004679_030--Hb_005582_040 Hb_011228_010 Hb_011228_010 Hb_004679_030--Hb_011228_010 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_002027_080--Hb_001518_080 Hb_000441_090 Hb_000441_090 Hb_002027_080--Hb_000441_090 Hb_000773_040 Hb_000773_040 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090 Hb_019181_040 Hb_019181_040 Hb_000046_500--Hb_019181_040 Hb_007481_010 Hb_007481_010 Hb_000046_500--Hb_007481_010 Hb_000477_100 Hb_000477_100 Hb_000046_500--Hb_000477_100 Hb_002989_020 Hb_002989_020 Hb_000046_500--Hb_002989_020 Hb_000046_500--Hb_079526_040 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070 Hb_079526_040--Hb_001518_080 Hb_000078_140 Hb_000078_140 Hb_079526_040--Hb_000078_140 Hb_159809_070 Hb_159809_070 Hb_079526_040--Hb_159809_070 Hb_000359_210--Hb_002897_090 Hb_000359_210--Hb_002027_080 Hb_001195_400 Hb_001195_400 Hb_000359_210--Hb_001195_400 Hb_002874_110 Hb_002874_110 Hb_000359_210--Hb_002874_110 Hb_000359_210--Hb_004679_030 Hb_003206_110 Hb_003206_110 Hb_000359_210--Hb_003206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1067 18.0587 21.2435 34.509 16.3532 17.0163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5232 12.9184 22.8247 25.3429 34.2371

CAGE analysis