Hb_005653_010

Information

Type -
Description -
Location Contig5653: 10137-11241
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16670g
description POPTRDRAFT_648937; TFL1a family protein
nr
ID NP_001292967.1
description CEN-like protein 2 [Jatropha curcas]
swissprot
ID Q9XH43
description CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1
trembl
ID A0A067K5P7
description Terminal flower 1a OS=Jatropha curcas GN=TFL1a PE=2 SV=1
Gene Ontology
ID GO:0005634
description terminal flowering 1 protein partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48995: 10191-11702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005653_010 0.0 - - CEN-like protein 2 [Jatropha curcas]
2 Hb_151052_010 8.94806e-05 - - -
3 Hb_000500_250 0.0364276582 - - hypothetical protein CISIN_1g006096mg [Citrus sinensis]
4 Hb_020178_030 0.0383746101 - - conserved hypothetical protein [Ricinus communis]
5 Hb_025311_010 0.0405511858 - - -
6 Hb_005375_080 0.043098725 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
7 Hb_000024_100 0.04857313 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
8 Hb_005043_040 0.048707901 - - hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
9 Hb_000101_230 0.0504434332 - - hypothetical protein CICLE_v10030840mg [Citrus clementina]
10 Hb_000286_120 0.0513175018 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
11 Hb_025107_010 0.0562387374 - - PREDICTED: alkaline/neutral invertase CINV2-like [Sesamum indicum]
12 Hb_002311_420 0.0739416837 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
13 Hb_000137_120 0.0810841144 - - hypothetical protein JCGZ_15021 [Jatropha curcas]
14 Hb_006634_120 0.0945099409 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
15 Hb_092655_010 0.1044278059 - - PREDICTED: uncharacterized protein LOC105650151 [Jatropha curcas]
16 Hb_024074_030 0.1110154929 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
17 Hb_143373_010 0.1111201994 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
18 Hb_019953_010 0.1165430515 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
19 Hb_064445_040 0.1214956614 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
20 Hb_002660_180 0.122243142 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005653_010 Hb_005653_010 Hb_151052_010 Hb_151052_010 Hb_005653_010--Hb_151052_010 Hb_000500_250 Hb_000500_250 Hb_005653_010--Hb_000500_250 Hb_020178_030 Hb_020178_030 Hb_005653_010--Hb_020178_030 Hb_025311_010 Hb_025311_010 Hb_005653_010--Hb_025311_010 Hb_005375_080 Hb_005375_080 Hb_005653_010--Hb_005375_080 Hb_000024_100 Hb_000024_100 Hb_005653_010--Hb_000024_100 Hb_151052_010--Hb_000500_250 Hb_151052_010--Hb_020178_030 Hb_151052_010--Hb_025311_010 Hb_151052_010--Hb_005375_080 Hb_151052_010--Hb_000024_100 Hb_000500_250--Hb_020178_030 Hb_000500_250--Hb_025311_010 Hb_000500_250--Hb_005375_080 Hb_000101_230 Hb_000101_230 Hb_000500_250--Hb_000101_230 Hb_000286_120 Hb_000286_120 Hb_000500_250--Hb_000286_120 Hb_020178_030--Hb_025311_010 Hb_020178_030--Hb_005375_080 Hb_020178_030--Hb_000101_230 Hb_020178_030--Hb_000286_120 Hb_002311_420 Hb_002311_420 Hb_020178_030--Hb_002311_420 Hb_025311_010--Hb_005375_080 Hb_025311_010--Hb_000101_230 Hb_025311_010--Hb_000286_120 Hb_025311_010--Hb_002311_420 Hb_005375_080--Hb_000101_230 Hb_005375_080--Hb_000286_120 Hb_005375_080--Hb_002311_420 Hb_005043_040 Hb_005043_040 Hb_000024_100--Hb_005043_040 Hb_025107_010 Hb_025107_010 Hb_000024_100--Hb_025107_010 Hb_092655_010 Hb_092655_010 Hb_000024_100--Hb_092655_010 Hb_000024_100--Hb_000500_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.723894 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.371086

CAGE analysis