Hb_005653_100

Information

Type -
Description -
Location Contig5653: 97728-109204
Sequence    

Annotation

kegg
ID pop:POPTR_0004s19580g
description POPTRDRAFT_196461; hypothetical protein
nr
ID XP_002305561.2
description hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
swissprot
ID Q93ZB9
description Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1
trembl
ID B9H1Z1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s19580g PE=4 SV=2
Gene Ontology
ID GO:0080019
description fatty acyl- reductase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49006: 100422-108998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005653_100 0.0 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
2 Hb_001609_080 0.0534255846 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
3 Hb_000407_110 0.0901634421 - - ripening-induced ACC oxidase [Carica papaya]
4 Hb_020902_020 0.1029184672 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
5 Hb_111693_010 0.104113376 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
6 Hb_004055_080 0.1115596849 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_006919_010 0.1167469467 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
8 Hb_001775_050 0.1203279295 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
9 Hb_000220_170 0.1206980564 - - -
10 Hb_001473_100 0.1278513781 - - chalcone synthase 1 [Jatropha curcas]
11 Hb_058526_010 0.1286653942 - - -
12 Hb_000288_140 0.1294763665 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
13 Hb_000038_090 0.1306215505 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
14 Hb_000631_130 0.1306490467 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
15 Hb_002374_110 0.1352435312 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
16 Hb_025469_040 0.1402627319 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
17 Hb_007483_030 0.1404416749 - - -
18 Hb_008080_040 0.1422048798 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
19 Hb_001101_020 0.1451453519 - - hypothetical protein RCOM_0615680 [Ricinus communis]
20 Hb_111985_160 0.1455117121 - - hypothetical protein B456_010G008900 [Gossypium raimondii]

Gene co-expression network

sample Hb_005653_100 Hb_005653_100 Hb_001609_080 Hb_001609_080 Hb_005653_100--Hb_001609_080 Hb_000407_110 Hb_000407_110 Hb_005653_100--Hb_000407_110 Hb_020902_020 Hb_020902_020 Hb_005653_100--Hb_020902_020 Hb_111693_010 Hb_111693_010 Hb_005653_100--Hb_111693_010 Hb_004055_080 Hb_004055_080 Hb_005653_100--Hb_004055_080 Hb_006919_010 Hb_006919_010 Hb_005653_100--Hb_006919_010 Hb_001609_080--Hb_000407_110 Hb_001609_080--Hb_006919_010 Hb_001609_080--Hb_020902_020 Hb_000288_140 Hb_000288_140 Hb_001609_080--Hb_000288_140 Hb_001609_080--Hb_111693_010 Hb_000407_110--Hb_006919_010 Hb_007483_030 Hb_007483_030 Hb_000407_110--Hb_007483_030 Hb_008080_040 Hb_008080_040 Hb_000407_110--Hb_008080_040 Hb_004586_080 Hb_004586_080 Hb_000407_110--Hb_004586_080 Hb_001775_050 Hb_001775_050 Hb_020902_020--Hb_001775_050 Hb_020902_020--Hb_008080_040 Hb_020902_020--Hb_000407_110 Hb_001454_300 Hb_001454_300 Hb_020902_020--Hb_001454_300 Hb_111693_010--Hb_004055_080 Hb_000220_170 Hb_000220_170 Hb_111693_010--Hb_000220_170 Hb_058526_010 Hb_058526_010 Hb_111693_010--Hb_058526_010 Hb_001789_010 Hb_001789_010 Hb_111693_010--Hb_001789_010 Hb_000029_420 Hb_000029_420 Hb_111693_010--Hb_000029_420 Hb_004055_080--Hb_000220_170 Hb_004055_080--Hb_058526_010 Hb_004055_080--Hb_000029_420 Hb_001473_100 Hb_001473_100 Hb_004055_080--Hb_001473_100 Hb_002374_110 Hb_002374_110 Hb_006919_010--Hb_002374_110 Hb_002376_030 Hb_002376_030 Hb_006919_010--Hb_002376_030 Hb_006919_010--Hb_007483_030 Hb_003166_040 Hb_003166_040 Hb_006919_010--Hb_003166_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0246247 1.47158 2.17796 0.503953 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.05174 0.0925986

CAGE analysis