Hb_005653_120

Information

Type -
Description -
Location Contig5653: 118213-122281
Sequence    

Annotation

kegg
ID cic:CICLE_v10028434mg
description hypothetical protein
nr
ID XP_008228919.1
description PREDICTED: fatty acyl-CoA reductase 3-like isoform X2 [Prunus mume]
swissprot
ID -
description -
trembl
ID V4SAM7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028434mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005653_120 0.0 - - PREDICTED: fatty acyl-CoA reductase 3-like isoform X2 [Prunus mume]
2 Hb_030982_040 0.1170089083 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
3 Hb_001946_320 0.1302907224 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
4 Hb_015974_010 0.1377386765 - - endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]
5 Hb_002307_090 0.1465085866 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
6 Hb_005615_070 0.1513119283 - - Rab7 [Hevea brasiliensis]
7 Hb_000809_050 0.1515842608 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
8 Hb_011457_170 0.1527085498 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
9 Hb_006452_060 0.1601462471 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_002291_030 0.1612783814 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
11 Hb_001102_010 0.1623980295 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
12 Hb_006132_060 0.1639252153 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
13 Hb_010589_040 0.1641744704 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000252_040 0.1656455554 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
15 Hb_000072_280 0.1670127641 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
16 Hb_001198_030 0.1686742567 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
17 Hb_001437_240 0.1689151956 - - -
18 Hb_015934_020 0.1703247472 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
19 Hb_005000_290 0.1706035389 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
20 Hb_005955_020 0.1720569328 - - ring finger containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005653_120 Hb_005653_120 Hb_030982_040 Hb_030982_040 Hb_005653_120--Hb_030982_040 Hb_001946_320 Hb_001946_320 Hb_005653_120--Hb_001946_320 Hb_015974_010 Hb_015974_010 Hb_005653_120--Hb_015974_010 Hb_002307_090 Hb_002307_090 Hb_005653_120--Hb_002307_090 Hb_005615_070 Hb_005615_070 Hb_005653_120--Hb_005615_070 Hb_000809_050 Hb_000809_050 Hb_005653_120--Hb_000809_050 Hb_030982_040--Hb_000809_050 Hb_030982_040--Hb_015974_010 Hb_000072_280 Hb_000072_280 Hb_030982_040--Hb_000072_280 Hb_006452_060 Hb_006452_060 Hb_030982_040--Hb_006452_060 Hb_001102_010 Hb_001102_010 Hb_030982_040--Hb_001102_010 Hb_001946_320--Hb_002307_090 Hb_001232_130 Hb_001232_130 Hb_001946_320--Hb_001232_130 Hb_010589_040 Hb_010589_040 Hb_001946_320--Hb_010589_040 Hb_000861_040 Hb_000861_040 Hb_001946_320--Hb_000861_040 Hb_015934_020 Hb_015934_020 Hb_001946_320--Hb_015934_020 Hb_007229_060 Hb_007229_060 Hb_001946_320--Hb_007229_060 Hb_005867_040 Hb_005867_040 Hb_015974_010--Hb_005867_040 Hb_004453_140 Hb_004453_140 Hb_015974_010--Hb_004453_140 Hb_113951_010 Hb_113951_010 Hb_015974_010--Hb_113951_010 Hb_000638_020 Hb_000638_020 Hb_015974_010--Hb_000638_020 Hb_002307_090--Hb_001232_130 Hb_002307_090--Hb_007229_060 Hb_002307_090--Hb_000861_040 Hb_005000_290 Hb_005000_290 Hb_002307_090--Hb_005000_290 Hb_002291_030 Hb_002291_030 Hb_002307_090--Hb_002291_030 Hb_001621_180 Hb_001621_180 Hb_005615_070--Hb_001621_180 Hb_000143_050 Hb_000143_050 Hb_005615_070--Hb_000143_050 Hb_004297_040 Hb_004297_040 Hb_005615_070--Hb_004297_040 Hb_000032_260 Hb_000032_260 Hb_005615_070--Hb_000032_260 Hb_005615_070--Hb_002291_030 Hb_000085_300 Hb_000085_300 Hb_005615_070--Hb_000085_300 Hb_004650_070 Hb_004650_070 Hb_000809_050--Hb_004650_070 Hb_000304_020 Hb_000304_020 Hb_000809_050--Hb_000304_020 Hb_000809_050--Hb_000072_280 Hb_001366_220 Hb_001366_220 Hb_000809_050--Hb_001366_220 Hb_000085_310 Hb_000085_310 Hb_000809_050--Hb_000085_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0485 0.227719 0.655952 1.36657 17.8068 4.5036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9512 23.407 23.858 1.19898 0.985589

CAGE analysis