Hb_005654_010

Information

Type -
Description -
Location Contig5654: 2279-7079
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0043231
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005654_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000375_180 0.148569825 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
3 Hb_012938_010 0.1888525816 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_001335_050 0.2116970778 - - -
5 Hb_071130_040 0.2362043625 - - conserved hypothetical protein [Ricinus communis]
6 Hb_104721_010 0.2472566136 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
7 Hb_107221_010 0.2537579505 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_186054_010 0.2612227766 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_012717_030 0.2802526653 - - hypothetical protein, partial [Pseudomonas fluorescens]
10 Hb_057207_010 0.2805895693 - - hypothetical protein F383_17010 [Gossypium arboreum]
11 Hb_000016_120 0.2872113418 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
12 Hb_004656_080 0.291103831 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_001233_040 0.2937316828 - - PREDICTED: uncharacterized protein LOC105775263 [Gossypium raimondii]
14 Hb_000757_090 0.2938104906 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
15 Hb_000545_120 0.2989456657 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_156924_020 0.2996727761 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
17 Hb_124621_010 0.3082274438 - - hypothetical protein L484_019698 [Morus notabilis]
18 Hb_001344_030 0.3083796001 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_006212_030 0.3151675241 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
20 Hb_003020_290 0.3214429818 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]

Gene co-expression network

sample Hb_005654_010 Hb_005654_010 Hb_000375_180 Hb_000375_180 Hb_005654_010--Hb_000375_180 Hb_012938_010 Hb_012938_010 Hb_005654_010--Hb_012938_010 Hb_001335_050 Hb_001335_050 Hb_005654_010--Hb_001335_050 Hb_071130_040 Hb_071130_040 Hb_005654_010--Hb_071130_040 Hb_104721_010 Hb_104721_010 Hb_005654_010--Hb_104721_010 Hb_107221_010 Hb_107221_010 Hb_005654_010--Hb_107221_010 Hb_000375_180--Hb_012938_010 Hb_000545_120 Hb_000545_120 Hb_000375_180--Hb_000545_120 Hb_000375_180--Hb_071130_040 Hb_000375_180--Hb_001335_050 Hb_003124_210 Hb_003124_210 Hb_000375_180--Hb_003124_210 Hb_012938_010--Hb_071130_040 Hb_002811_340 Hb_002811_340 Hb_012938_010--Hb_002811_340 Hb_000016_120 Hb_000016_120 Hb_012938_010--Hb_000016_120 Hb_156924_020 Hb_156924_020 Hb_012938_010--Hb_156924_020 Hb_001335_050--Hb_107221_010 Hb_001335_050--Hb_071130_040 Hb_057207_010 Hb_057207_010 Hb_001335_050--Hb_057207_010 Hb_007064_030 Hb_007064_030 Hb_001335_050--Hb_007064_030 Hb_124621_010 Hb_124621_010 Hb_071130_040--Hb_124621_010 Hb_004656_080 Hb_004656_080 Hb_071130_040--Hb_004656_080 Hb_071130_040--Hb_107221_010 Hb_186054_010 Hb_186054_010 Hb_104721_010--Hb_186054_010 Hb_001344_030 Hb_001344_030 Hb_104721_010--Hb_001344_030 Hb_012717_030 Hb_012717_030 Hb_104721_010--Hb_012717_030 Hb_000757_090 Hb_000757_090 Hb_104721_010--Hb_000757_090 Hb_005542_170 Hb_005542_170 Hb_104721_010--Hb_005542_170 Hb_107221_010--Hb_124621_010 Hb_107221_010--Hb_057207_010 Hb_178654_020 Hb_178654_020 Hb_107221_010--Hb_178654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00696395 0 0 0 0.00384355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0191933 0.0226572 0 0.0059798 0.0486249

CAGE analysis