Hb_005656_060

Information

Type -
Description -
Location Contig5656: 33340-35352
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_060 0.0 - - -
2 Hb_000457_160 0.1659899402 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
3 Hb_005867_080 0.1784511718 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]
4 Hb_022288_020 0.2044081376 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
5 Hb_041774_010 0.2269094211 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
6 Hb_001767_020 0.2298227389 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
7 Hb_010317_030 0.239149309 - - unknown [Picea sitchensis]
8 Hb_002027_340 0.2392334159 - - -
9 Hb_002890_230 0.2411855006 - - hypothetical protein MTR_5g084920 [Medicago truncatula]
10 Hb_010317_020 0.2436221885 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
11 Hb_000012_300 0.2488437 - - -
12 Hb_010620_010 0.2510884088 - - hypothetical protein JCGZ_22570 [Jatropha curcas]
13 Hb_006198_050 0.2532251596 - - protein with unknown function [Ricinus communis]
14 Hb_006026_040 0.2540775478 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
15 Hb_000077_130 0.2549613281 - - PREDICTED: callose synthase 12 [Jatropha curcas]
16 Hb_001678_020 0.2578227447 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
17 Hb_000103_360 0.2578565438 - - -
18 Hb_000208_290 0.2582824905 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
19 Hb_011640_020 0.2595862011 - - hypothetical protein VITISV_036432 [Vitis vinifera]
20 Hb_000445_080 0.2619363776 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005656_060 Hb_005656_060 Hb_000457_160 Hb_000457_160 Hb_005656_060--Hb_000457_160 Hb_005867_080 Hb_005867_080 Hb_005656_060--Hb_005867_080 Hb_022288_020 Hb_022288_020 Hb_005656_060--Hb_022288_020 Hb_041774_010 Hb_041774_010 Hb_005656_060--Hb_041774_010 Hb_001767_020 Hb_001767_020 Hb_005656_060--Hb_001767_020 Hb_010317_030 Hb_010317_030 Hb_005656_060--Hb_010317_030 Hb_006198_050 Hb_006198_050 Hb_000457_160--Hb_006198_050 Hb_011640_020 Hb_011640_020 Hb_000457_160--Hb_011640_020 Hb_000208_290 Hb_000208_290 Hb_000457_160--Hb_000208_290 Hb_000457_160--Hb_022288_020 Hb_002027_340 Hb_002027_340 Hb_000457_160--Hb_002027_340 Hb_005867_080--Hb_001767_020 Hb_004102_130 Hb_004102_130 Hb_005867_080--Hb_004102_130 Hb_011021_030 Hb_011021_030 Hb_005867_080--Hb_011021_030 Hb_005867_080--Hb_000208_290 Hb_004156_060 Hb_004156_060 Hb_005867_080--Hb_004156_060 Hb_000077_130 Hb_000077_130 Hb_022288_020--Hb_000077_130 Hb_007926_040 Hb_007926_040 Hb_022288_020--Hb_007926_040 Hb_010436_030 Hb_010436_030 Hb_022288_020--Hb_010436_030 Hb_006026_040 Hb_006026_040 Hb_022288_020--Hb_006026_040 Hb_000016_110 Hb_000016_110 Hb_022288_020--Hb_000016_110 Hb_000497_140 Hb_000497_140 Hb_022288_020--Hb_000497_140 Hb_041774_010--Hb_001767_020 Hb_003073_130 Hb_003073_130 Hb_041774_010--Hb_003073_130 Hb_098466_010 Hb_098466_010 Hb_041774_010--Hb_098466_010 Hb_001668_030 Hb_001668_030 Hb_041774_010--Hb_001668_030 Hb_058884_010 Hb_058884_010 Hb_041774_010--Hb_058884_010 Hb_041774_010--Hb_005867_080 Hb_004460_020 Hb_004460_020 Hb_001767_020--Hb_004460_020 Hb_001767_020--Hb_001668_030 Hb_001775_040 Hb_001775_040 Hb_001767_020--Hb_001775_040 Hb_008147_030 Hb_008147_030 Hb_001767_020--Hb_008147_030 Hb_024272_010 Hb_024272_010 Hb_010317_030--Hb_024272_010 Hb_007827_020 Hb_007827_020 Hb_010317_030--Hb_007827_020 Hb_007603_010 Hb_007603_010 Hb_010317_030--Hb_007603_010 Hb_071869_010 Hb_071869_010 Hb_010317_030--Hb_071869_010 Hb_001983_010 Hb_001983_010 Hb_010317_030--Hb_001983_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.99944 0.703492 0.313988 0.379242 8.75914 19.5091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.538218 0.281829 11.2353 0.896826 0.756483

CAGE analysis