Hb_005656_080

Information

Type -
Description -
Location Contig5656: 55963-59399
Sequence    

Annotation

kegg
ID rcu:RCOM_0205000
description Poly(rC)-binding protein, putative (EC:3.1.2.15)
nr
ID XP_012076309.1
description PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
swissprot
ID Q9SZH4
description RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana GN=PEP PE=2 SV=1
trembl
ID A0A067KNN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07000 PE=4 SV=1
Gene Ontology
ID GO:0003723
description poly -binding protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49014: 55978-56513 , PASA_asmbl_49015: 57161-57362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_080 0.0 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
2 Hb_003605_050 0.1011585229 - - protein with unknown function [Ricinus communis]
3 Hb_000186_330 0.10422712 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
4 Hb_004725_030 0.10557396 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
5 Hb_000059_200 0.1061523975 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
6 Hb_000077_120 0.1076168658 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
7 Hb_000205_130 0.1138755064 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_096819_010 0.1187627768 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
9 Hb_008165_030 0.1190607027 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
10 Hb_048476_150 0.1195495369 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
11 Hb_000625_120 0.1200132485 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
12 Hb_010287_030 0.1247926028 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000139_220 0.1259325697 - - leucine rich repeat-containing protein, putative [Ricinus communis]
14 Hb_000983_120 0.126834666 - - cyclin-dependent protein kinase, putative [Ricinus communis]
15 Hb_010362_030 0.1280725158 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
16 Hb_172257_010 0.1291990849 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
17 Hb_000122_010 0.1293505246 - - amino acid transporter, putative [Ricinus communis]
18 Hb_007163_060 0.129421094 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
19 Hb_143766_110 0.1309593002 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
20 Hb_009449_060 0.1319698426 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005656_080 Hb_005656_080 Hb_003605_050 Hb_003605_050 Hb_005656_080--Hb_003605_050 Hb_000186_330 Hb_000186_330 Hb_005656_080--Hb_000186_330 Hb_004725_030 Hb_004725_030 Hb_005656_080--Hb_004725_030 Hb_000059_200 Hb_000059_200 Hb_005656_080--Hb_000059_200 Hb_000077_120 Hb_000077_120 Hb_005656_080--Hb_000077_120 Hb_000205_130 Hb_000205_130 Hb_005656_080--Hb_000205_130 Hb_004943_030 Hb_004943_030 Hb_003605_050--Hb_004943_030 Hb_000227_270 Hb_000227_270 Hb_003605_050--Hb_000227_270 Hb_023226_070 Hb_023226_070 Hb_003605_050--Hb_023226_070 Hb_000115_340 Hb_000115_340 Hb_003605_050--Hb_000115_340 Hb_008165_030 Hb_008165_030 Hb_003605_050--Hb_008165_030 Hb_002903_140 Hb_002903_140 Hb_003605_050--Hb_002903_140 Hb_003746_030 Hb_003746_030 Hb_000186_330--Hb_003746_030 Hb_000069_590 Hb_000069_590 Hb_000186_330--Hb_000069_590 Hb_000735_050 Hb_000735_050 Hb_000186_330--Hb_000735_050 Hb_002379_050 Hb_002379_050 Hb_000186_330--Hb_002379_050 Hb_014361_150 Hb_014361_150 Hb_000186_330--Hb_014361_150 Hb_003994_140 Hb_003994_140 Hb_000186_330--Hb_003994_140 Hb_000139_220 Hb_000139_220 Hb_004725_030--Hb_000139_220 Hb_004725_030--Hb_000077_120 Hb_001621_110 Hb_001621_110 Hb_004725_030--Hb_001621_110 Hb_013405_150 Hb_013405_150 Hb_004725_030--Hb_013405_150 Hb_026234_010 Hb_026234_010 Hb_004725_030--Hb_026234_010 Hb_073171_090 Hb_073171_090 Hb_000059_200--Hb_073171_090 Hb_002081_120 Hb_002081_120 Hb_000059_200--Hb_002081_120 Hb_096819_010 Hb_096819_010 Hb_000059_200--Hb_096819_010 Hb_000958_150 Hb_000958_150 Hb_000059_200--Hb_000958_150 Hb_003470_030 Hb_003470_030 Hb_000059_200--Hb_003470_030 Hb_000059_200--Hb_000205_130 Hb_002291_060 Hb_002291_060 Hb_000077_120--Hb_002291_060 Hb_044155_010 Hb_044155_010 Hb_000077_120--Hb_044155_010 Hb_002890_150 Hb_002890_150 Hb_000077_120--Hb_002890_150 Hb_000077_120--Hb_013405_150 Hb_000077_120--Hb_000139_220 Hb_000890_010 Hb_000890_010 Hb_000077_120--Hb_000890_010 Hb_008387_010 Hb_008387_010 Hb_000205_130--Hb_008387_010 Hb_003912_040 Hb_003912_040 Hb_000205_130--Hb_003912_040 Hb_008568_020 Hb_008568_020 Hb_000205_130--Hb_008568_020 Hb_003096_060 Hb_003096_060 Hb_000205_130--Hb_003096_060 Hb_002615_120 Hb_002615_120 Hb_000205_130--Hb_002615_120 Hb_000525_100 Hb_000525_100 Hb_000205_130--Hb_000525_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.9013 6.81816 9.36557 4.44422 3.77873 6.72651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76727 1.28314 2.30911 2.31726 1.83409

CAGE analysis