Hb_005656_100

Information

Type -
Description -
Location Contig5656: 67616-73299
Sequence    

Annotation

kegg
ID rcu:RCOM_0205120
description hypothetical protein
nr
ID XP_002527981.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPR2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0205120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49016: 67649-67878 , PASA_asmbl_49017: 68556-68711 , PASA_asmbl_49018: 72107-73220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000673_020 0.0828194563 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
3 Hb_001005_080 0.0949278601 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
4 Hb_003880_030 0.0954950944 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
5 Hb_007850_080 0.0960642473 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
6 Hb_013405_140 0.1000314038 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
7 Hb_000175_030 0.1027259964 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
8 Hb_033642_080 0.1036601375 - - V-type proton ATPase subunit E [Hevea brasiliensis]
9 Hb_003783_030 0.1041763529 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
10 Hb_004931_100 0.108271384 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
11 Hb_003291_020 0.1094854601 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
12 Hb_001481_140 0.1113387352 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
13 Hb_007192_100 0.1116109109 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
14 Hb_005137_060 0.11449335 - - -
15 Hb_002016_080 0.1147770579 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
16 Hb_003462_120 0.1147884748 - - Acidic endochitinase [Theobroma cacao]
17 Hb_000125_210 0.1176133169 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
18 Hb_001519_030 0.1201444568 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
19 Hb_004672_010 0.1209118603 - - ecotropic viral integration site, putative [Ricinus communis]
20 Hb_027654_050 0.1213632245 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]

Gene co-expression network

sample Hb_005656_100 Hb_005656_100 Hb_000673_020 Hb_000673_020 Hb_005656_100--Hb_000673_020 Hb_001005_080 Hb_001005_080 Hb_005656_100--Hb_001005_080 Hb_003880_030 Hb_003880_030 Hb_005656_100--Hb_003880_030 Hb_007850_080 Hb_007850_080 Hb_005656_100--Hb_007850_080 Hb_013405_140 Hb_013405_140 Hb_005656_100--Hb_013405_140 Hb_000175_030 Hb_000175_030 Hb_005656_100--Hb_000175_030 Hb_000673_020--Hb_013405_140 Hb_000673_020--Hb_003880_030 Hb_000673_020--Hb_000175_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_000934_190 Hb_000934_190 Hb_000673_020--Hb_000934_190 Hb_002016_080 Hb_002016_080 Hb_000673_020--Hb_002016_080 Hb_000417_260 Hb_000417_260 Hb_001005_080--Hb_000417_260 Hb_001481_140 Hb_001481_140 Hb_001005_080--Hb_001481_140 Hb_001519_030 Hb_001519_030 Hb_001005_080--Hb_001519_030 Hb_007192_100 Hb_007192_100 Hb_001005_080--Hb_007192_100 Hb_152910_020 Hb_152910_020 Hb_001005_080--Hb_152910_020 Hb_005463_140 Hb_005463_140 Hb_001005_080--Hb_005463_140 Hb_000384_120 Hb_000384_120 Hb_003880_030--Hb_000384_120 Hb_072922_020 Hb_072922_020 Hb_003880_030--Hb_072922_020 Hb_001979_020 Hb_001979_020 Hb_003880_030--Hb_001979_020 Hb_001329_150 Hb_001329_150 Hb_003880_030--Hb_001329_150 Hb_000922_040 Hb_000922_040 Hb_003880_030--Hb_000922_040 Hb_003442_070 Hb_003442_070 Hb_007850_080--Hb_003442_070 Hb_033642_080 Hb_033642_080 Hb_007850_080--Hb_033642_080 Hb_008226_080 Hb_008226_080 Hb_007850_080--Hb_008226_080 Hb_004453_080 Hb_004453_080 Hb_007850_080--Hb_004453_080 Hb_002631_180 Hb_002631_180 Hb_007850_080--Hb_002631_180 Hb_013405_140--Hb_002016_080 Hb_011485_020 Hb_011485_020 Hb_013405_140--Hb_011485_020 Hb_007037_020 Hb_007037_020 Hb_013405_140--Hb_007037_020 Hb_003783_030 Hb_003783_030 Hb_013405_140--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_013405_140--Hb_011021_040 Hb_161175_010 Hb_161175_010 Hb_000175_030--Hb_161175_010 Hb_000175_030--Hb_011021_040 Hb_000175_030--Hb_003880_030 Hb_003462_120 Hb_003462_120 Hb_000175_030--Hb_003462_120 Hb_000175_030--Hb_007192_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.68767 6.04768 4.97837 9.18467 2.31876 4.49614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9387 28.2909 20.9716 15.9625 10.5156

CAGE analysis