Hb_005656_120

Information

Type -
Description -
Location Contig5656: 86168-100304
Sequence    

Annotation

kegg
ID rcu:RCOM_0205150
description Ubiquinone biosynthesis protein coq-8, putative
nr
ID XP_012076305.1
description PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
swissprot
ID Q55884
description Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0095 PE=3 SV=1
trembl
ID A0A067KNN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06995 PE=4 SV=1
Gene Ontology
ID GO:0016772
description abc1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_120 0.0 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
2 Hb_002062_010 0.0570344434 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
3 Hb_003417_050 0.0623220217 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_128986_010 0.064056709 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000017_180 0.0667137408 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
6 Hb_015561_010 0.0735695805 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007163_110 0.0758613404 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
8 Hb_001512_130 0.0781792862 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
9 Hb_143629_170 0.0785261572 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
10 Hb_006242_050 0.0795862468 - - Osmotin precursor, putative [Ricinus communis]
11 Hb_136408_040 0.0836857817 - - PREDICTED: protein NDR1 [Jatropha curcas]
12 Hb_002119_100 0.0847635446 - - cytochrome B561, putative [Ricinus communis]
13 Hb_007483_090 0.0880487027 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002200_030 0.088613184 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
15 Hb_000031_180 0.0890587498 - - sarcosine oxidase, putative [Ricinus communis]
16 Hb_149694_010 0.0905477427 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
17 Hb_004459_010 0.0922497051 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
18 Hb_002740_050 0.0934421208 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
19 Hb_027472_060 0.0936623019 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
20 Hb_004650_110 0.0956479079 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]

Gene co-expression network

sample Hb_005656_120 Hb_005656_120 Hb_002062_010 Hb_002062_010 Hb_005656_120--Hb_002062_010 Hb_003417_050 Hb_003417_050 Hb_005656_120--Hb_003417_050 Hb_128986_010 Hb_128986_010 Hb_005656_120--Hb_128986_010 Hb_000017_180 Hb_000017_180 Hb_005656_120--Hb_000017_180 Hb_015561_010 Hb_015561_010 Hb_005656_120--Hb_015561_010 Hb_007163_110 Hb_007163_110 Hb_005656_120--Hb_007163_110 Hb_002062_010--Hb_128986_010 Hb_002062_010--Hb_015561_010 Hb_002062_010--Hb_000017_180 Hb_002062_010--Hb_003417_050 Hb_002119_100 Hb_002119_100 Hb_002062_010--Hb_002119_100 Hb_003417_050--Hb_128986_010 Hb_007483_090 Hb_007483_090 Hb_003417_050--Hb_007483_090 Hb_003417_050--Hb_002119_100 Hb_143629_170 Hb_143629_170 Hb_003417_050--Hb_143629_170 Hb_128986_010--Hb_143629_170 Hb_001278_120 Hb_001278_120 Hb_128986_010--Hb_001278_120 Hb_128986_010--Hb_007483_090 Hb_005183_050 Hb_005183_050 Hb_000017_180--Hb_005183_050 Hb_000017_180--Hb_003417_050 Hb_000017_180--Hb_128986_010 Hb_000017_180--Hb_007483_090 Hb_001512_130 Hb_001512_130 Hb_015561_010--Hb_001512_130 Hb_015561_010--Hb_002119_100 Hb_009023_010 Hb_009023_010 Hb_015561_010--Hb_009023_010 Hb_015561_010--Hb_003417_050 Hb_015561_010--Hb_007483_090 Hb_003152_020 Hb_003152_020 Hb_007163_110--Hb_003152_020 Hb_005842_010 Hb_005842_010 Hb_007163_110--Hb_005842_010 Hb_006242_050 Hb_006242_050 Hb_007163_110--Hb_006242_050 Hb_136408_040 Hb_136408_040 Hb_007163_110--Hb_136408_040 Hb_007163_110--Hb_000017_180 Hb_004650_110 Hb_004650_110 Hb_007163_110--Hb_004650_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.125612 1.05017 2.56771 0.0136291 0.0126757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0243033 0 0.086785 2.20133

CAGE analysis