Hb_005656_200

Information

Type -
Description -
Location Contig5656: 178406-181434
Sequence    

Annotation

kegg
ID rcu:RCOM_0205370
description Cation transport protein chaC, putative
nr
ID XP_002527996.1
description Cation transport protein chaC, putative [Ricinus communis]
swissprot
ID Q641Z5
description Putative glutathione-specific gamma-glutamylcyclotransferase 2 OS=Rattus norvegicus GN=Chac2 PE=2 SV=1
trembl
ID B9SPS7
description Cation transport protein chaC, putative OS=Ricinus communis GN=RCOM_0205370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49029: 178441-181411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_200 0.0 - - Cation transport protein chaC, putative [Ricinus communis]
2 Hb_000422_050 0.1196309573 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
3 Hb_009476_010 0.1196461965 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
4 Hb_007441_150 0.1196554664 - - Ankyrin repeat family protein [Theobroma cacao]
5 Hb_000032_230 0.1271417697 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
6 Hb_001894_060 0.1354543999 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
7 Hb_032260_100 0.1375142779 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
8 Hb_000805_150 0.1440666713 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
9 Hb_000988_020 0.1443391368 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
10 Hb_029622_080 0.1451237035 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
11 Hb_090306_010 0.1451295392 - - hypothetical protein POPTR_0007s02300g [Populus trichocarpa]
12 Hb_097007_020 0.1503388957 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
13 Hb_160576_010 0.1511303567 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
14 Hb_000322_020 0.1537492779 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
15 Hb_001247_010 0.1542172215 - - galactinol synthase [Manihot esculenta]
16 Hb_000571_030 0.1550475682 - - ammonium transporter, putative [Ricinus communis]
17 Hb_078901_010 0.1562738895 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
18 Hb_001257_040 0.1579393433 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
19 Hb_000373_250 0.162193347 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
20 Hb_035677_010 0.1636040128 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005656_200 Hb_005656_200 Hb_000422_050 Hb_000422_050 Hb_005656_200--Hb_000422_050 Hb_009476_010 Hb_009476_010 Hb_005656_200--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_005656_200--Hb_007441_150 Hb_000032_230 Hb_000032_230 Hb_005656_200--Hb_000032_230 Hb_001894_060 Hb_001894_060 Hb_005656_200--Hb_001894_060 Hb_032260_100 Hb_032260_100 Hb_005656_200--Hb_032260_100 Hb_000322_020 Hb_000322_020 Hb_000422_050--Hb_000322_020 Hb_001257_040 Hb_001257_040 Hb_000422_050--Hb_001257_040 Hb_004586_120 Hb_004586_120 Hb_000422_050--Hb_004586_120 Hb_002849_030 Hb_002849_030 Hb_000422_050--Hb_002849_030 Hb_000127_220 Hb_000127_220 Hb_000422_050--Hb_000127_220 Hb_012496_010 Hb_012496_010 Hb_000422_050--Hb_012496_010 Hb_011287_020 Hb_011287_020 Hb_009476_010--Hb_011287_020 Hb_009476_010--Hb_032260_100 Hb_000805_150 Hb_000805_150 Hb_009476_010--Hb_000805_150 Hb_009476_010--Hb_000422_050 Hb_029622_080 Hb_029622_080 Hb_009476_010--Hb_029622_080 Hb_078901_010 Hb_078901_010 Hb_009476_010--Hb_078901_010 Hb_000024_020 Hb_000024_020 Hb_007441_150--Hb_000024_020 Hb_007441_150--Hb_001894_060 Hb_000988_020 Hb_000988_020 Hb_007441_150--Hb_000988_020 Hb_007441_150--Hb_032260_100 Hb_007441_150--Hb_000805_150 Hb_007441_150--Hb_029622_080 Hb_160576_010 Hb_160576_010 Hb_000032_230--Hb_160576_010 Hb_000780_110 Hb_000780_110 Hb_000032_230--Hb_000780_110 Hb_002110_050 Hb_002110_050 Hb_000032_230--Hb_002110_050 Hb_001956_160 Hb_001956_160 Hb_000032_230--Hb_001956_160 Hb_004241_100 Hb_004241_100 Hb_000032_230--Hb_004241_100 Hb_002548_020 Hb_002548_020 Hb_000032_230--Hb_002548_020 Hb_158926_010 Hb_158926_010 Hb_001894_060--Hb_158926_010 Hb_000808_090 Hb_000808_090 Hb_001894_060--Hb_000808_090 Hb_001894_060--Hb_029622_080 Hb_001894_060--Hb_032260_100 Hb_101058_020 Hb_101058_020 Hb_001894_060--Hb_101058_020 Hb_032260_100--Hb_029622_080 Hb_000656_350 Hb_000656_350 Hb_032260_100--Hb_000656_350 Hb_000529_050 Hb_000529_050 Hb_032260_100--Hb_000529_050 Hb_032260_100--Hb_000808_090 Hb_000571_030 Hb_000571_030 Hb_032260_100--Hb_000571_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.927818 394.822 140.57 93.8592 0.610294 0.327292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.53842 15.8604 6.66057 2.26174 53.8162

CAGE analysis