Hb_005656_210

Information

Type -
Description -
Location Contig5656: 183655-186865
Sequence    

Annotation

kegg
ID rcu:RCOM_0205380
description transcription factor, putative
nr
ID XP_012076290.1
description PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06985 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49030: 184142-186255 , PASA_asmbl_49031: 184605-185525 , PASA_asmbl_49032: 186317-186943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_210 0.0 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
2 Hb_006623_020 0.0812133007 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
3 Hb_003018_060 0.0836309033 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
4 Hb_001329_130 0.0857370029 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001983_030 0.0865470795 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
6 Hb_010968_010 0.0916136661 - - Golgi snare 12 isoform 1 [Theobroma cacao]
7 Hb_000808_250 0.0916741057 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
8 Hb_000920_280 0.0935708517 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
9 Hb_000174_110 0.0940455649 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
10 Hb_006960_050 0.095699111 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
11 Hb_027043_020 0.0967359495 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002918_030 0.0969004389 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
13 Hb_021422_010 0.0982277921 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
14 Hb_000676_050 0.0998190433 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
15 Hb_000670_020 0.1001972125 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
16 Hb_000106_130 0.1002929618 - - unnamed protein product [Vitis vinifera]
17 Hb_008887_050 0.1020042336 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
18 Hb_002639_150 0.1028718182 - - -
19 Hb_004837_190 0.1033998062 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
20 Hb_003292_040 0.1053635279 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]

Gene co-expression network

sample Hb_005656_210 Hb_005656_210 Hb_006623_020 Hb_006623_020 Hb_005656_210--Hb_006623_020 Hb_003018_060 Hb_003018_060 Hb_005656_210--Hb_003018_060 Hb_001329_130 Hb_001329_130 Hb_005656_210--Hb_001329_130 Hb_001983_030 Hb_001983_030 Hb_005656_210--Hb_001983_030 Hb_010968_010 Hb_010968_010 Hb_005656_210--Hb_010968_010 Hb_000808_250 Hb_000808_250 Hb_005656_210--Hb_000808_250 Hb_006623_020--Hb_000808_250 Hb_021422_010 Hb_021422_010 Hb_006623_020--Hb_021422_010 Hb_000617_220 Hb_000617_220 Hb_006623_020--Hb_000617_220 Hb_006623_020--Hb_003018_060 Hb_000920_280 Hb_000920_280 Hb_006623_020--Hb_000920_280 Hb_003091_010 Hb_003091_010 Hb_006623_020--Hb_003091_010 Hb_003018_060--Hb_021422_010 Hb_006960_050 Hb_006960_050 Hb_003018_060--Hb_006960_050 Hb_106552_050 Hb_106552_050 Hb_003018_060--Hb_106552_050 Hb_000640_220 Hb_000640_220 Hb_003018_060--Hb_000640_220 Hb_006620_020 Hb_006620_020 Hb_003018_060--Hb_006620_020 Hb_000260_100 Hb_000260_100 Hb_001329_130--Hb_000260_100 Hb_020367_050 Hb_020367_050 Hb_001329_130--Hb_020367_050 Hb_000649_070 Hb_000649_070 Hb_001329_130--Hb_000649_070 Hb_000236_240 Hb_000236_240 Hb_001329_130--Hb_000236_240 Hb_005288_150 Hb_005288_150 Hb_001329_130--Hb_005288_150 Hb_001329_130--Hb_006960_050 Hb_000913_050 Hb_000913_050 Hb_001983_030--Hb_000913_050 Hb_000367_130 Hb_000367_130 Hb_001983_030--Hb_000367_130 Hb_002918_030 Hb_002918_030 Hb_001983_030--Hb_002918_030 Hb_178968_100 Hb_178968_100 Hb_001983_030--Hb_178968_100 Hb_003044_100 Hb_003044_100 Hb_001983_030--Hb_003044_100 Hb_135377_010 Hb_135377_010 Hb_001983_030--Hb_135377_010 Hb_000676_050 Hb_000676_050 Hb_010968_010--Hb_000676_050 Hb_000205_120 Hb_000205_120 Hb_010968_010--Hb_000205_120 Hb_002292_010 Hb_002292_010 Hb_010968_010--Hb_002292_010 Hb_001504_150 Hb_001504_150 Hb_010968_010--Hb_001504_150 Hb_002784_050 Hb_002784_050 Hb_010968_010--Hb_002784_050 Hb_010968_010--Hb_000920_280 Hb_003849_060 Hb_003849_060 Hb_000808_250--Hb_003849_060 Hb_000808_250--Hb_021422_010 Hb_000359_330 Hb_000359_330 Hb_000808_250--Hb_000359_330 Hb_000808_250--Hb_178968_100 Hb_000808_250--Hb_106552_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.7478 7.51857 16.7119 12.0407 30.1806 15.1822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3818 15.5968 7.70431 8.08092 6.4597

CAGE analysis